View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_high_35 (Length: 365)
Name: NF17209_high_35
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 5887364 - 5887716
Alignment:
| Q |
1 |
cacaaagatctttacagaagccgaaattcaatggcttatacacaatacagaaacatcnnnnnnnnngttttgttcttttctcaccaagggtgacgaactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||| |
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| T |
5887364 |
cacaaagatctttacagaagccgaaattcaatggcttatacacaatacagaaacatctttttttgtgttttgctctttactcaccaagggtgacgaactt |
5887463 |
T |
|
| Q |
101 |
acttccatgtcctcaaaaagcacatagtggaaaaccattcacaatactgcaaaatcactaacatgtacaagtatggtatactctttcaatagtcttcgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5887464 |
acttccatgtcctcaaaaagcacatagtggaaaaccattcacaatactgcaaaatcactaacatgtacaagtatggtatactctttcaatagtcttcgaa |
5887563 |
T |
|
| Q |
201 |
aatatgagtagttcagaagactactgcaatataagaaagcactgtagtttctcaaaagtaactaccccgaaggagttggatgtgcttttcttcttgcaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5887564 |
aatatgagtagttcagaagactactgcaatataagaaagcactgtagtttctcaaaagtaactaccccgaaggagttggatgtgcttttcttcttgcaaa |
5887663 |
T |
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| Q |
301 |
gaacataaaaattcgcggaaacaatggctttttcttcttctttccacttttca |
353 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5887664 |
gaacataaaaattcgcggaaacaatgactttttcttcttctttccacttttca |
5887716 |
T |
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