View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17209_high_37 (Length: 353)
Name: NF17209_high_37
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_high_37 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 34467393 - 34467730
Alignment:
| Q |
1 |
agataatagcattcataaattgtgcgagaaataataataataccgagcagtgctattcttcacgagagaaatcctcccgagagcatcgcgaaaacaagca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34467393 |
agataatagcattcataaattgtgtgagaaataataataatactgagcagtgctattcttcacgagagaaatcctcccgagagcatcgcgaaaacaagca |
34467492 |
T |
|
| Q |
101 |
cagccaatgaaaatgcagtgcctagcggaaaacacggcgggatggcggaaaacatggaatccaaaaccactaaaacatgccaagtgtctcgtgaactcct |
200 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34467493 |
cagccaatgaaaatgtagtgcctaacggaaaacatgtcaggatggcggaaaacacggaatccaaaaccactaaaacatgccaagtgtctcatgaactcct |
34467592 |
T |
|
| Q |
201 |
tcgttgtccttttcttcgcgagacatagcattattgataataataatacccttagatagaattcaacaagggaaaagggttgaatctattaggagtatta |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34467593 |
tcgctgtccttttcttcgcgagacatagcattattg---ataataatacccttagatagaattcaacaagggaaaagggttgaatctattaggagtatta |
34467689 |
T |
|
| Q |
301 |
ttttcatagtttttaattgtaggctgatgtgtagttccctt |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34467690 |
ttttcatagtttttaattgtaggctgatgtgtagttccctt |
34467730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 14195289 - 14195207
Alignment:
| Q |
156 |
ggaatccaaaaccactaaaacatgccaagtgtctcgtgaactccttcgttgtccttttcttcgcgagacatagcattattgat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14195289 |
ggaatccaaaaccactaaaacatgccaagtgtctcgtgaacttcttcgctgtccttttcttcgcgagacatagcattattgat |
14195207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 102 - 239
Target Start/End: Original strand, 50644645 - 50644782
Alignment:
| Q |
102 |
agccaatgaaaatgcagtgcctagcggaaaacacggcgggatggcggaaaacatggaatccaaaaccactaaaacatgccaagtgtctcgtgaactcctt |
201 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||| |||||||| |||| || ||||| ||| ||||| |||||| |||||||||||||| || |
|
|
| T |
50644645 |
agccaatgaaaattcagtgcctagcggaaaacacgacggaatggcggagaacacaaaagccaaagccattaaaatttgccaactgtctcgtgaactcatt |
50644744 |
T |
|
| Q |
202 |
cgttgtccttttcttcgcgagacatagcattattgata |
239 |
Q |
| |
|
|| | | | || |||||| | ||||||||||||||||| |
|
|
| T |
50644745 |
cgctatgcattccttcgctacacatagcattattgata |
50644782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University