View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_high_4 (Length: 740)
Name: NF17209_high_4
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 711; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 711; E-Value: 0
Query Start/End: Original strand, 1 - 727
Target Start/End: Original strand, 5887995 - 5888721
Alignment:
| Q |
1 |
ttgttcacttcattcaacttctccattgttttcaattcagtctccttagctatatcgatctcagaatttgccgttgcaactctcgaattggctctttctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5887995 |
ttgttcacttcattcaacttctccattgttttcaattcagtctccttagctatatcgatctcagaatttgccgttgcaactctcgaattggctctttctt |
5888094 |
T |
|
| Q |
101 |
ctgcatcatgaacttgtttcgttatacgatagtactcttcaactgatagtatcacaccatttgatggatccacttcattgttgttgcttctagccgactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5888095 |
ctgcatcatgaacttgtttcgttatacgatagtactcttcaactgatagtatcacaccatttgatggatccacttcattgttgttgcttctagccgactc |
5888194 |
T |
|
| Q |
201 |
gctctcttgcaatgctttaattgcttgtattgccaacctttcagaagctcttgcagcttctatctccttttgagctgcaagtaatctactatgcattgta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5888195 |
gctctcttgcaatgctttaattgcttgtattgccaacctttctgaagctcttgcagcttctatctccttttgagctgcaagtaatctactatgcattgta |
5888294 |
T |
|
| Q |
301 |
ctaacaccggccttggcttgttctgcttcctcctttactctcctaaacacttcgcaagcttctcgagcaagcaagttggccttatttgcctcttcagacg |
400 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5888295 |
ctagcaccggccttggcttgttctgcttcctcctttactctcctaaacacttcgcaagcttctcgagcaagcaagttggccttatttgcctcttcagacg |
5888394 |
T |
|
| Q |
401 |
cttcttgaagcttctttggcagctcaaggatcatctctttgccttctttttccttcatctgaacaaaagcaatatccgatttagttttgttcagctcgac |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5888395 |
cttcttgaagcttctttggcagctcaaggatcatctctttgccttctttttccttcatctgaacaaaagcaatatccgatttagttttgttcagctcgac |
5888494 |
T |
|
| Q |
501 |
ttcgatagacgcaactgtaatcgaggccattccctctctttgcctaatcgaggcaagcgatgatttctcttgttcgagttctgatcttaatgatgttgca |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5888495 |
ttcgatagacgcaactgtaatcgaggccattccctctctttgcccaatcgaggcaagcgatgatttctcttgttcgagttctgatcttaatgatgttgca |
5888594 |
T |
|
| Q |
601 |
gccacctttaagttatttacctcagaagtagctttctctatgttaagctttacttcttcaagttcctttttagccgactcaactgccgcttgcatttcaa |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5888595 |
gccacctttaagttatttacctcagaagtagctttctctatgtcaagctttacttcttcaagttcctttttagccgactcaactgccgcttgcatttcaa |
5888694 |
T |
|
| Q |
701 |
tatgtgacttgtccagttgctcctttg |
727 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
5888695 |
tatgtgacttgtccagttgctcctttg |
5888721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 9e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 202 - 669
Target Start/End: Complemental strand, 46806692 - 46806225
Alignment:
| Q |
202 |
ctctcttgcaatgctttaattgcttgtattgccaacctttcagaagctcttgcagcttctatctccttttgagctgcaagtaatctactatgcattgtac |
301 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | |||||||| ||||||| |||||||||||||||||||||||||| || || | || |||| |
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|
| T |
46806692 |
ctctcttgcaatgctttaattgctgctattgccaacttctcagaagcctttgcagcctctatctccttttgagctgcaagtaacctgctttccaaggtac |
46806593 |
T |
|
| Q |
302 |
taacaccggccttggcttgttctgcttcctcctttactctcctaaacacttcgcaagcttctcgagcaagcaagttggccttatttgcctcttcagacgc |
401 |
Q |
| |
|
| || || |||||||||||||||||||| |||||||| || | |||| | |||| || |||||||||||||||||| ||| |||||||||| | |
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|
| T |
46806592 |
ttactccagccttggcttgttctgcttctgcctttactttctgcagttcttcacgagctgcttgagcaagcaagttggcctgattagcctcttcagctgt |
46806493 |
T |
|
| Q |
402 |
ttcttgaagcttctttggcagctcaaggatcatctctttgccttctttttccttcatctgaacaaaagcaatatccgatttagttttgttcagctcgact |
501 |
Q |
| |
|
| ||| ||||||||||| || || || |||||| ||||||| |||||||| ||||| ||||| || || ||| |||| |||| || || || |
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|
| T |
46806492 |
tagttgcagcttctttggaagttcggtcatttgttctttggcttctttctccttcatttgaaccaaagctatttctgatctagtcttgtccaattcagct |
46806393 |
T |
|
| Q |
502 |
tcgatagacgcaactgtaatcgaggccattccctctctttgcctaatcgaggcaagcgatgatttctcttgttcgagttctgatcttaatgatgttgcag |
601 |
Q |
| |
|
|| | ||| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||| |||| ||||| |||| |
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|
| T |
46806392 |
tctagagatgcaactgcaatggaggccattccctctctttgcctaatcgaggcaagagatgatttttcttgttccagttctgattttaaagatgtagcag |
46806293 |
T |
|
| Q |
602 |
ccacctttaagttatttacctcagaagtagctttctctatgttaagctttacttcttcaagttccttt |
669 |
Q |
| |
|
| | ||| ||| | | ||||||| | | ||||||||||||||||| ||||| || |||||||||||| |
|
|
| T |
46806292 |
ctagcttcaagcaactaacctcagcatttgctttctctatgttaagttttacctcctcaagttccttt |
46806225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 313 - 386
Target Start/End: Original strand, 9286604 - 9286677
Alignment:
| Q |
313 |
ttggcttgttctgcttcctcctttactctcctaaacacttcgcaagcttctcgagcaagcaagttggccttatt |
386 |
Q |
| |
|
||||||||||| || ||||||||| |||||| |||||||| || || | | |||||||||||||||||||||| |
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|
| T |
9286604 |
ttggcttgttccgcctcctccttttctctccgaaacactttgcgggcatattgagcaagcaagttggccttatt |
9286677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 313 - 386
Target Start/End: Original strand, 9297934 - 9298008
Alignment:
| Q |
313 |
ttggcttgttctgcttcctcctttactctcctaaacacttcgcaagcttctcgagcaagcaag-ttggccttatt |
386 |
Q |
| |
|
||||||||||| || ||||||||| |||||| |||||| ||| ||||| | ||||||||||| ||||||||||| |
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|
| T |
9297934 |
ttggcttgttccgcctcctccttttctctccgaaacacaacgcgagcttattgagcaagcaagtttggccttatt |
9298008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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