View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_high_43 (Length: 312)
Name: NF17209_high_43
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_high_43 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 6865914 - 6865621
Alignment:
| Q |
1 |
gatctactaaccattaaaatcaaagctgatgacgataagggtgacattccagtacttctagccgcaaccaagggacacaaaaaagtaactagatttcttt |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6865914 |
gatctactaaccatgaaaatcaaagctgatgacgataagggtgacattccagtacttctagccgcaaccaagggacacaaaaaagtgactagatttcttt |
6865815 |
T |
|
| Q |
101 |
tttccaagactcgatggttcaccctactcgacaacaattgttattatggtgcgaaacttctttcgcattgcattcatgcagaaatatttggtaagtgttg |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6865814 |
tttccaagactcgatggttcacgctactcgacaacaattgttattatggtgctaaacttctttcgcattgcattcatgcacaaatatttggtaagtgttg |
6865715 |
T |
|
| Q |
201 |
atgtcttaaatttgtttaacttcttttgtttaaatacattttgaatcaaaccctcttctttttatttttcactggattgacaaaatataaaaac |
294 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6865714 |
atgtcttaaatttgtttaacttcttttgtttaaatagattttgaatcaaaccctcttctttttatttttcactggattgataaaatataaaaac |
6865621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 6133189 - 6132947
Alignment:
| Q |
1 |
gatctactaaccattaaaatcaaagctgatgacgataagggtgacattccagtacttctagccgcaaccaagggacacaaaaaagtaactagatttcttt |
100 |
Q |
| |
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|||||||| || || ||||| ||||||||||| | ||| |||||||||||||||||||| |||||| | ||||| |||||| || | || |||||||| | |
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| T |
6133189 |
gatctactgacaatgaaaataaaagctgatgatggtaaaggtgacattccagtacttcttgccgcagcaaagggccacaaagaaatgacgagatttctat |
6133090 |
T |
|
| Q |
101 |
tttccaagactcgatggttcaccctactcgacaacaattgttattatggtgcgaaacttctttcgcattgcattcatgcagaaatatttggtaagtgttg |
200 |
Q |
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|||||| ||||||||||||||| || |||||||||| |||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
6133089 |
tttccatgactcgatggttcactttaactgacaacaattattattatggtgctaaacttctttcatattgcatccatgcagaaatatttggtaagtgttg |
6132990 |
T |
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| Q |
201 |
atgtcttaaatttgtttaac-ttcttttgtttaaatacatttt |
242 |
Q |
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|||| | ||||| |||||| ||||||||||||||||| |||| |
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| T |
6132989 |
atgtttgaaattcatttaacattcttttgtttaaatacttttt |
6132947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 6088481 - 6088684
Alignment:
| Q |
1 |
gatctactaaccattaaaatcaaagctgatgacgataagggtgacattccagtacttctagccgcaaccaagggacacaaaaaagtaactagatttcttt |
100 |
Q |
| |
|
||||| |||||||| |||||||||||| |||| |||| |||||||||||||||||||||||||||||||| || |||||| || | || |||||||||| |
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| T |
6088481 |
gatcttctaaccatgaaaatcaaagctaatgataataaaggtgacattccagtacttctagccgcaaccaatggccacaaagaaatgacgagatttcttt |
6088580 |
T |
|
| Q |
101 |
tttccaagactcgatggttcaccctactcgacaacaattgttattatggtgcgaaacttctttcgcattgcattcatgcagaaatatttggtaagtgttg |
200 |
Q |
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||||||| |||| ||||| ||||||| || ||| |||||| ||||||||| ||||||||||| || ||||| ||||| ||| ||| ||||||| ||| |
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| T |
6088581 |
tttccaaaactccatggtccaccctagaggagaacgattgtttttatggtgctaaacttctttcacactgcatccatgccgaattatatggtaagcgttc |
6088680 |
T |
|
| Q |
201 |
atgt |
204 |
Q |
| |
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|||| |
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|
| T |
6088681 |
atgt |
6088684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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