View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_high_47 (Length: 296)
Name: NF17209_high_47
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_high_47 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 4440686 - 4440416
Alignment:
| Q |
20 |
tctatgttagtaggtgcacttataacaggcctgaatttgttgaatttaattagtctaaagaattagataggatgttaattgttcctggcacaatagcatt |
119 |
Q |
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| T |
4440686 |
tctatgttagtaggtgcacttataacaggcctgaatttgttgaatttaatttgtctaaagaattagataggatgttaattattcctggcacaatagcatt |
4440587 |
T |
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| Q |
120 |
ggcaacaagagaagcaatagtcctacaaagttccaatagggtggagaaatgcattgctttccaatgttcctcaaatgattctcaaatgaagggacttgcc |
219 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4440586 |
ggcaacaagagaagcaataatcctacaaagttccaatagggtggagaaatgcattgctttccaatgttcctcaaatgattctcaaatgaagggacttgcc |
4440487 |
T |
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| Q |
220 |
tcctaagcatggcagtgtggtacatagaagttttctgctaatattgatgtgtttgtggtcgttcatctcac |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4440486 |
tcctaagcatggcagtgtggtacatagaagttttctgctaatattgatgtgtttgtggtcgttcatgtcac |
4440416 |
T |
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