View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17209_high_5 (Length: 695)

Name: NF17209_high_5
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17209_high_5
NF17209_high_5
[»] chr2 (9 HSPs)
chr2 (487-680)||(21788844-21789040)
chr2 (276-430)||(21787699-21787846)
chr2 (29-137)||(41849224-41849333)
chr2 (36-137)||(17651484-17651585)
chr2 (201-258)||(34409326-34409383)
chr2 (196-259)||(41849344-41849407)
chr2 (40-89)||(26576300-26576349)
chr2 (64-128)||(38783606-38783670)
chr2 (206-259)||(17651616-17651669)
[»] chr5 (1 HSPs)
chr5 (29-106)||(40838127-40838204)
[»] chr7 (4 HSPs)
chr7 (57-128)||(27994152-27994223)
chr7 (40-136)||(11816770-11816867)
chr7 (164-257)||(22291133-22291226)
chr7 (40-128)||(11820374-11820462)
[»] chr8 (7 HSPs)
chr8 (61-119)||(2874948-2875006)
chr8 (31-128)||(13097660-13097757)
chr8 (206-259)||(27402657-27402710)
chr8 (164-281)||(18393289-18393402)
chr8 (39-95)||(31772663-31772719)
chr8 (36-119)||(15131812-15131895)
chr8 (50-136)||(18393393-18393479)
[»] chr6 (6 HSPs)
chr6 (183-259)||(17261930-17262006)
chr6 (196-284)||(17540370-17540454)
chr6 (31-128)||(17261814-17261911)
chr6 (206-259)||(34010950-34011003)
chr6 (58-122)||(6821278-6821342)
chr6 (36-80)||(17540250-17540294)
[»] chr4 (3 HSPs)
chr4 (196-259)||(55681037-55681100)
chr4 (40-114)||(40289005-40289079)
chr4 (35-91)||(18198688-18198744)
[»] chr3 (2 HSPs)
chr3 (36-81)||(26565533-26565578)
chr3 (205-253)||(12704610-12704658)
[»] chr1 (2 HSPs)
chr1 (44-89)||(3387883-3387928)
chr1 (40-128)||(16426663-16426751)
[»] scaffold0002 (1 HSPs)
scaffold0002 (35-91)||(289053-289109)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 3e-87; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 487 - 680
Target Start/End: Original strand, 21788844 - 21789040
Alignment:
Q  487 tgagcttcaaaatcaagttataaaaattatatacacaatcaaaagtaaataaaaatgcatattttgatcactttctgatgcttgttaacatggctagtta 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21788844 tgagcttcaaaatcaagttataaaaattatatacacaatcaaaagtaaataaaaatgcatattttgatcactttctgatgcttgttaacatggctagtta 21788943  T
Q  587 atttccaattttcca-----ccaacacacacaaaactaaccagaattcatccacaaaaaatgataagtcaaaatctaatcacacaaaaagtgattaatt 680  Q
    ||||||||  |||||     ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21788944 atttccaa--ttccaattttccaacacacacaaaactaaccagaattcatccacaaaaaatgacaagtcaaaatctaatcacacaaaaagtgattaatt 21789040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 276 - 430
Target Start/End: Original strand, 21787699 - 21787846
Alignment:
Q  276 ggttataaaagatgatgatatcattaagaaaatagaggtgactactgacagataacaagatagtacaaaagtataacaaagtttaaaataaattagaatt 375  Q
    |||||||| ||||||||||||||||||||||||| |||||||        ||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  21787699 ggttataatagatgatgatatcattaagaaaatataggtgacg-------gataacaagatagtacataagtataacaaaatttaaaataaattagaatt 21787791  T
Q  376 taagtgggttttaattttaacccacgaaacctatttgtaaggtaagggtatccat 430  Q
    | |   | |||||||| || ||| | ||||| |||||||||||||||||||||||    
T  21787792 ttaagagattttaattctatcccgcaaaaccaatttgtaaggtaagggtatccat 21787846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 41849224 - 41849333
Alignment:
Q  29 agacatatgtctgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataactta-t 127  Q
    |||||| ||| |||||||||||||| | |||||||||||||||||||||||| ||| ||| |||||| ||| ||||||||||| |||||||||||||| |    
T  41849224 agacatttgtttgagttgtccgacacgcctcatataagtgttatataggtgtcggacaccagtccaaggagtgtcgaaataaaaaagaaaataacttatt 41849323  T
Q  128 taggacactt 137  Q
    ||||||||||    
T  41849324 taggacactt 41849333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 36 - 137
Target Start/End: Original strand, 17651484 - 17651585
Alignment:
Q  36 tgtctgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataacttattaggacac 135  Q
    ||||| |||||||||||| | ||||||||||||||||||| |||| ||| ||||||| || ||| |||||| |||||||||||| ||||  |||||||||    
T  17651484 tgtctaagttgtccgacacgcctcatataagtgttatataagtgtcggacaccggtcaaaggagtgtcgaagtaaagaagaaaacaactatttaggacac 17651583  T
Q  136 tt 137  Q
    ||    
T  17651584 tt 17651585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 34409383 - 34409326
Alignment:
Q  201 taggggtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctagaggtg 258  Q
    |||| |||||||||| |||||||| ||||||||| ||||||||||| |||||||||||    
T  34409383 taggagtgtcggacatcaacgcgtgtccgacaccgcgacacgcctagtcctagaggtg 34409326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 41849344 - 41849407
Alignment:
Q  196 tgtcgtaggggtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctagaggtgt 259  Q
    |||| |||| |||||||||||| |||||| || |||||| ||||||||||||| ||||||||||    
T  41849344 tgtcataggagtgtcggacaccgacgcgtgtctgacaccgcgacacgcctaattctagaggtgt 41849407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 26576300 - 26576349
Alignment:
Q  40 tgagttgtccgacatgtctcatataagtgttatataggtgttggagaccg 89  Q
    |||||||||||||| | ||| ||| |||||||||||||||||||||||||    
T  26576300 tgagttgtccgacacggctcgtatgagtgttatataggtgttggagaccg 26576349  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 38783670 - 38783606
Alignment:
Q  64 aagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataacttatt 128  Q
    |||||||||| |||||| ||| |||||||||| ||| |||||| || | ||||||||||||||||    
T  38783670 aagtgttatacaggtgtcggacaccggtccaaggagtgtcgaagtagaaaagaaaataacttatt 38783606  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 17651616 - 17651669
Alignment:
Q  206 gtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctagaggtgt 259  Q
    |||||||||||  |||||| || |||||| ||||||||||||||||| ||||||    
T  17651616 gtgtcggacactgacgcgtgtcggacaccgcgacacgcctaatcctaaaggtgt 17651669  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 40838127 - 40838204
Alignment:
Q  29 agacatatgtctgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaa 106  Q
    |||||| |||||||||||||||||| | ||  ||| |||||||||||| ||| ||| |||||||||||||| ||||||    
T  40838127 agacatttgtctgagttgtccgacacgacttgtatgagtgttatatagatgtcggacaccggtccaaagagtgtcgaa 40838204  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 27994152 - 27994223
Alignment:
Q  57 ctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataacttatt 128  Q
    |||||||||||||||||||||| |  || ||||||||||| || || ||| |||||||||||| ||||||||    
T  27994152 ctcatataagtgttatataggtatcagacaccggtccaaaaagtgttgaagtaaagaagaaaacaacttatt 27994223  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 11816867 - 11816770
Alignment:
Q  40 tgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataactta-ttaggacact 136  Q
    ||||||||||||||   ||||||||||||| ||||| ||||  || || | ||  | ||| |||||||||||||||||||||||||| ||||||||||    
T  11816867 tgagttgtccgacacacctcatataagtgtcatataagtgtcagacacggatcttaggagtgtcgaaataaagaagaaaataacttatttaggacact 11816770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 22291133 - 22291226
Alignment:
Q  164 ttaggacacttgttcaacgcgtgtcatacgaatgtcgtaggggtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctagaggt 257  Q
    |||||||||  ||||||| |||||  ||||  |||| |||| |||||||||||| |||||| || |||||  ||||| ||||| ||||||||||    
T  22291133 ttaggacaccggttcaacacgtgtggtacgggtgtcataggagtgtcggacaccgacgcgtgtcggacactgcgacatgcctagtcctagaggt 22291226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 11820462 - 11820374
Alignment:
Q  40 tgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataacttatt 128  Q
    ||||||||| ||||   |||| ||||||||||||||| |||  || |||| ||| ||||| | | || |||||||||||||||||||||    
T  11820462 tgagttgtctgacacacctcaaataagtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatt 11820374  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 2875006 - 2874948
Alignment:
Q  61 tataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaa 119  Q
    ||||||| |||||||||||||||| ||| |||||| ||| ||| |||||||||||||||    
T  2875006 tataagttttatataggtgttggacaccagtccaaggagtgtcaaaataaagaagaaaa 2874948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 13097660 - 13097757
Alignment:
Q  31 acatatgtctgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataacttatt 128  Q
    |||| ||| ||| |||||||||| |  ||||||||||||||||||||||| | | ||||||| || ||| |||  | |||||||||||||| ||||||    
T  13097660 acatttgtttgaattgtccgacacgcttcatataagtgttatataggtgtcgcacaccggtctaaggagtgtcacagtaaagaagaaaatatcttatt 13097757  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 27402657 - 27402710
Alignment:
Q  206 gtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctagaggtgt 259  Q
    |||||||||||| || ||| || |||||||| ||||||||||||||||||||||    
T  27402657 gtgtcggacaccgacacgtgtcagacaccacaacacgcctaatcctagaggtgt 27402710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 164 - 281
Target Start/End: Complemental strand, 18393402 - 18393289
Alignment:
Q  164 ttaggacacttgttcaacgcgtgtcatacgaatgtcgtaggggtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctagaggtgtgtgt 263  Q
    |||||||||| |||| || |||||| ||||| |||| |||| |||||| ||||| || | | || |||||  ||| ||||||||||||||||    ||||    
T  18393402 ttaggacactagttcgacacgtgtcgtacgagtgtcataggagtgtcgaacacctacacatgtcagacactccgaaacgcctaatcctagag----gtgt 18393307  T
Q  264 atgtgcttcataggttat 281  Q
     |||||||||||||||||    
T  18393306 ttgtgcttcataggttat 18393289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 31772663 - 31772719
Alignment:
Q  39 ctgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggtccaa 95  Q
    ||||||||||||||| ||||| ||| |||||||||||||| | ||| ||||||||||    
T  31772663 ctgagttgtccgacacgtctcgtatgagtgttatataggtatcggacaccggtccaa 31772719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 15131895 - 15131812
Alignment:
Q  36 tgtctgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaa 119  Q
    |||||||||||| |||||   ||||||| |||||||||||||||| ||| |||||||  | ||| |||||| ||||||| ||||    
T  15131895 tgtctgagttgttcgacactgctcatatgagtgttatataggtgtcggacaccggtcgtaggagtgtcgaagtaaagaaaaaaa 15131812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 18393479 - 18393393
Alignment:
Q  50 gacatgtctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataactta-ttaggacact 136  Q
    |||| ||||||||| |||||||||||||||||||| ||||| |||  ||| |||||| |||||| ||||| || ||| ||||||||||    
T  18393479 gacacgtctcatatgagtgttatataggtgttggacaccgg-ccagggagtgtcgaagtaaagatgaaaacaaattatttaggacact 18393393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 17261930 - 17262006
Alignment:
Q  183 cgtgtcatacgaatgtcgtaggggtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctagaggtgt 259  Q
    |||||| ||||| ||||||||| |||| |||||   |||||| || ||||||||||||||||||||  |||||||||    
T  17261930 cgtgtcgtacgagtgtcgtaggagtgttggacaatgacgcgtgtcggacaccacgacacgcctaatgatagaggtgt 17262006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 284
Target Start/End: Original strand, 17540370 - 17540454
Alignment:
Q  196 tgtcgtaggggtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctagaggtgtgtgtatgtgcttcataggttataaa 284  Q
    |||| |||| |||||||||||| | |||| || |||||  ||||||| ||||||||||||    |||||||||||||||| ||||||||    
T  17540370 tgtcataggagtgtcggacaccgatgcgtatcggacactgcgacacgtctaatcctagag----gtgtatgtgcttcatatgttataaa 17540454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 17261814 - 17261911
Alignment:
Q  31 acatatgtctgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataacttatt 128  Q
    |||||||| ||| ||||||||||    ||||||||||||||   |||||| ||| ||||||| ||  || ||||||||||||||||||| | ||||||    
T  17261814 acatatgtttgaattgtccgacacacttcatataagtgttaagcaggtgtcggacaccggtctaagaagtgtcgaaataaagaagaaaacaccttatt 17261911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 34011003 - 34010950
Alignment:
Q  206 gtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctagaggtgt 259  Q
    |||||||||||| |||||| || |||||| ||||||||||| |||| |||||||    
T  34011003 gtgtcggacaccgacgcgtgtcggacaccgcgacacgcctagtccttgaggtgt 34010950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 6821278 - 6821342
Alignment:
Q  58 tcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataa 122  Q
    |||||||||||||||||| ||||  || |  ||||||||| | || |||||||||||||||||||    
T  6821278 tcatataagtgttatataagtgtgtgacattggtccaaagggtgttgaaataaagaagaaaataa 6821342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 17540250 - 17540294
Alignment:
Q  36 tgtctgagttgtccgacatgtctcatataagtgttatataggtgt 80  Q
    |||||||||||||||||| |  |||||| ||||||||||||||||    
T  17540250 tgtctgagttgtccgacacggttcatatgagtgttatataggtgt 17540294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 55681037 - 55681100
Alignment:
Q  196 tgtcgtaggggtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctagaggtgt 259  Q
    |||| |||| |||||||||||| |||||| || |||||| ||||||||||| |||| |||||||    
T  55681037 tgtcataggagtgtcggacaccgacgcgtgtcggacaccgcgacacgcctagtcctcgaggtgt 55681100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 40289079 - 40289005
Alignment:
Q  40 tgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaa 114  Q
    |||||||||||||||| ||| ||| |||||||||||||||| ||| |||| ||  | ||| |||||| |||||||    
T  40289079 tgagttgtccgacatgactcgtatgagtgttatataggtgtcggacaccgatcgtaggagtgtcgaagtaaagaa 40289005  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 18198744 - 18198688
Alignment:
Q  35 atgtctgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggt 91  Q
    |||||| ||||||| || ||||||| ||| |||||||||||||||| ||| ||||||    
T  18198744 atgtctcagttgtctgatatgtctcgtatgagtgttatataggtgtcggacaccggt 18198688  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 26565533 - 26565578
Alignment:
Q  36 tgtctgagttgtccgacatgtctcatataagtgttatataggtgtt 81  Q
    |||||||||||||||||| | ||| ||| |||||||||||||||||    
T  26565533 tgtctgagttgtccgacacggctcgtatgagtgttatataggtgtt 26565578  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 12704658 - 12704610
Alignment:
Q  205 ggtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctag 253  Q
    |||||||||||||||||| | ||||||||||  ||||| ||||||||||    
T  12704658 ggtgtcggacaccaacgcatgtccgacaccagaacacgtctaatcctag 12704610  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 3387883 - 3387928
Alignment:
Q  44 ttgtccgacatgtctcatataagtgttatataggtgttggagaccg 89  Q
    ||||| |||| ||||||||| |||||||||||||||||||| ||||    
T  3387883 ttgtcggacacgtctcatatgagtgttatataggtgttggacaccg 3387928  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 16426663 - 16426751
Alignment:
Q  40 tgagttgtccgacatgtctcatataagtgttatat-aggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataacttatt 128  Q
    |||||||||| ||| | |||||||||||||||||| |||||| | | | |||||||||||| ||| || ||||||| |||| ||||||||    
T  16426663 tgagttgtccaacacgcctcatataagtgttatataaggtgtcgaaca-cggtccaaagagtgtcaaagtaaagaaaaaaaaaacttatt 16426751  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 289053 - 289109
Alignment:
Q  35 atgtctgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggt 91  Q
    |||||| ||||||| || ||||||| ||| |||||||||||||||| ||| ||||||    
T  289053 atgtctcagttgtctgatatgtctcgtatgagtgttatataggtgtcggacaccggt 289109  T

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