View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_high_54 (Length: 269)
Name: NF17209_high_54
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_high_54 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 3976511 - 3976270
Alignment:
| Q |
11 |
caaagggacgttgctattacacattagaccgtctagttttccaagtatgattttttgggtatgtatgattcatagtttaatgataagtggacatgtcgtc |
110 |
Q |
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| T |
3976511 |
caaaaggacgttgctattacacattagaccgtctagttttccaagtatgattttttgggtatgtatgattcatagtttaatgataagtggacatgtcgtc |
3976412 |
T |
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| Q |
111 |
gcatggaataatcttgtaaagactgttgtagtatttaagcacaatttgtactatgtaaatcccaagcttgaataatcgaaaggtactaaaaccactctgc |
210 |
Q |
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| T |
3976411 |
gcatggaataatcttgtaaagac---tgtagtatttaagcacaatttgtactatgtaaatcccaagcttgaataatcgaaaggtactaaaaccactctgc |
3976315 |
T |
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| Q |
211 |
agtcagagacgtaggcacaattgctcgaactctgtaatcacatct |
255 |
Q |
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| T |
3976314 |
agtcagagacgtaggcacaattgctcgaactctgtaatcacatct |
3976270 |
T |
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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 6522207 - 6522112
Alignment:
| Q |
138 |
gtagtatttaagcacaatttgtactatgtaaatcccaagcttgaataatcgaaaggtactaaaaccactctgcagtcagagacgtaggcacaattg |
233 |
Q |
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| T |
6522207 |
gtagtatttaaacacaagttgtaatttgtaaatcctaagtttgaataatagaaaggtactacagctgctctgcagtctgagacgtaggcacaattg |
6522112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 38779460 - 38779552
Alignment:
| Q |
137 |
tgtagtatttaagcacaatttgtactatgtaaatcccaagcttgaataatcgaaaggtactaaaaccactctgcagtcagagacgtaggcaca |
229 |
Q |
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| T |
38779460 |
tgtagtatttaaacacaagttgtactatgcaaaccctaagcttgagtaatagaaaggtattgaagccactttgcagtcggagatgtagacaca |
38779552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 10842671 - 10842617
Alignment:
| Q |
138 |
gtagtatttaagcacaatttgtactatgtaaatcccaagcttgaataatcgaaag |
192 |
Q |
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| T |
10842671 |
gtagtatttaaacacaaattgtaatatgtaaatcctaagcttgaataatagaaag |
10842617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 4277451 - 4277409
Alignment:
| Q |
203 |
cactctgcagtcagagacgtaggcacaattgctcgaactctgt |
245 |
Q |
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| T |
4277451 |
cactctgctgtcagagacgtaggcacaattgtccgaactctgt |
4277409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 34372516 - 34372456
Alignment:
| Q |
138 |
gtagtatttaagcacaatttgtactatgtaaatcccaagcttgaataatcgaaaggtacta |
198 |
Q |
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| T |
34372516 |
gtagtatttaaatacaagttgtactttgtaaaccctaagcttgaataatagaagggtacta |
34372456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 11319364 - 11319421
Alignment:
| Q |
141 |
gtatttaagcacaatttgtactatgtaaatcccaagcttgaataatcgaaaggtacta |
198 |
Q |
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| T |
11319364 |
gtatttaagcacaagttgtaatctgtaaactctaagcttgaataatagaaaggtacta |
11319421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 31210523 - 31210568
Alignment:
| Q |
205 |
ctctgcagtcagagacgtaggcacaattgctcgaactctgtaatca |
250 |
Q |
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| T |
31210523 |
ctctgcagtccgagacttatgcacaattgctcgaactccgtaatca |
31210568 |
T |
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