View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_high_59 (Length: 251)
Name: NF17209_high_59
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_high_59 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 53345843 - 53346070
Alignment:
| Q |
18 |
taaaatgggatggagacatggagtgggttgaattacaaatataggttgaaattttcatcctaccccacccggccacgggttgatccatcggtagcaaaac |
117 |
Q |
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| T |
53345843 |
taaaatgggatggagacatggagtgggttgaattacaaatataggttgaaattttcatcctaccccacccggccacgggttgatccatcggtagcaaaac |
53345942 |
T |
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| Q |
118 |
acaagaaaatatagctaatgcatgataatgaatttaattttactttcagattaaacatcacgtgtagtccttacagtgctaaaaccttta----taattg |
213 |
Q |
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| T |
53345943 |
acaagaaaatatagctaatgcatgataatgaat----------tttcagattaaacatcacgtgtagtccttacagtgctaaaacctttataattaattg |
53346032 |
T |
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| Q |
214 |
ttagagacaagaattttcatacttcattactagtctat |
251 |
Q |
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| T |
53346033 |
ttagagacaagaattttcatacttcattactagtctat |
53346070 |
T |
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