View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_high_6 (Length: 678)
Name: NF17209_high_6
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 378 - 668
Target Start/End: Complemental strand, 2562259 - 2561974
Alignment:
| Q |
378 |
actgcttctaataaaatttgcaagttcaatgaaaaatatatannnnnnnnaaaatggacattgttggcattgttactttctaactccccccaccccagcc |
477 |
Q |
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| T |
2562259 |
actgcttctaataaaatttgcaagttcaatgaaaaaaatatttttttt---agatggacattgttggcattgttactttctaactccccccaccccagcc |
2562163 |
T |
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| Q |
478 |
accaagctatccttatatgaaacacaagtacacattcatctgcaacacattatatgagtgcatgttaattacttcttaccattttcagtattgttactct |
577 |
Q |
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| T |
2562162 |
accaagctatccttatatgaaacacaagtacacattcatctgcaacacattatatgagtgcttg----ttacttcttaccattttcagtattgttactct |
2562067 |
T |
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| Q |
578 |
tctagattatttttgtttgcctt--ttatacatatttcttaccattttgagttctgtttggtgtggtgtacatgttacatttgtcgtcctttg |
668 |
Q |
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| T |
2562066 |
tctagattatttttgtttgcctttattatacatatttcttaccattttgagttctgtttggtgtggtgtacatgttacatttgtcgtcctttg |
2561974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 331
Target Start/End: Complemental strand, 2562604 - 2562305
Alignment:
| Q |
19 |
gaagcttcctcttgaaagaaagacaaatttcaaccactttgtcccccatttccttgtattcttgaaaccttcaaaaggctatcaaaaaataaatatatag |
118 |
Q |
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| T |
2562604 |
gaagcttcctcttgaaagaaagacaaatttcaaccactttgtcccccatttccttgtattcttgaaaccttcaaaaggctatcaaaaaataaatatatag |
2562505 |
T |
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| Q |
119 |
aatatttttccatgcaccattccaaatgatgcatctacccaagagcgcttagatgaaatgacaaggtcttgggttcgaatacagctttctacatgcagca |
218 |
Q |
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| T |
2562504 |
aatatttttccatgca-----------------tctacccaagagcacttagatgaaatgataaggtcttgggttcgaatacagctttctgcatgcagca |
2562422 |
T |
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| Q |
219 |
gcattacaactcttatggagagtttgacgcttatttgggtccca----actcaagagattagtctctgcagttacacaagaggggtactcggtttacacc |
314 |
Q |
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| T |
2562421 |
gcgttacaactcttatgaagagtttggcgctcatttgggtcccacaagactcaagaaattagtctctgaagttacacaagcggggtacccggtttacacc |
2562322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 36994615 - 36994533
Alignment:
| Q |
180 |
caaggtcttgggttcgaatacagctttctacatgcagcagcattacaactcttatggagagtttgacgcttatttgggtccca |
262 |
Q |
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| T |
36994615 |
caaggtcctgggttcgaatccagccttggacatgcagcagcgttaaaactcttaaggagagtttgctgcccatttgggtccca |
36994533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 32883678 - 32883621
Alignment:
| Q |
187 |
ttgggttcgaatacagctttctacatgcagcagcattacaactcttatggagagtttg |
244 |
Q |
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| T |
32883678 |
ttgggttcgaatccagcattggacatgcagcagcgttaaaactcttagggagagtttg |
32883621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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