View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_high_61 (Length: 248)
Name: NF17209_high_61
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_high_61 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 35169049 - 35168822
Alignment:
| Q |
6 |
agtgagaagaatcggagatcattatacatggggtaataaccaagctagtggagatagaatctattataagatagacagatttattgctaacactagttgg |
105 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35169049 |
agtgagaacaatcggagatcattatacatggtgtaataaccaagctagtggagatagaatctattataagatagacagatttattgctaacactagttgg |
35168950 |
T |
|
| Q |
106 |
ctgcaaaggttcaacaatgcagtgggtgaagttcttcctaaaggagtatctgatcactgtcctatatgtatggatatgtcttgtcctgcttctccaaaga |
205 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35168949 |
ctgcaaaggttcaacaatgcactgggtgaagttcttcctaaaggagtatctgatcactgtcctatatgtatggatatgtcttgtcctgcttctccaaaga |
35168850 |
T |
|
| Q |
206 |
atactcctttcgtatttattaatgtatt |
233 |
Q |
| |
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||||||||||| |||||||||||||||| |
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| T |
35168849 |
atactcctttcctatttattaatgtatt |
35168822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 33634013 - 33633789
Alignment:
| Q |
6 |
agtgagaagaatcggagatcattatacatggggtaataaccaagctagtggagatagaatctattataagatagacagatttattgctaacactagttgg |
105 |
Q |
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|||||||| |||||||||| ||||||| ||| ||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||| ||||||||| |
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| T |
33634013 |
agtgagaacaatcggagattattatacttggtgtaataaccaaactagtggagatagaatatattctaagatagacagatttattgctaatactagttgg |
33633914 |
T |
|
| Q |
106 |
ctgcaaaggttcaacaatgcagtgggtgaagttcttcctaaaggagtatctgatcactgtcctatatgtatggatatgtcttgtcctgcttctccaaaga |
205 |
Q |
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||||||| ||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
33633913 |
ctgcaaaagttcaccaatgcagtgggcgaagtgcttcctaaaggagtatctgatcactgtcctatatctatggatatgtcttgtcctgcttctcctaaga |
33633814 |
T |
|
| Q |
206 |
atactcctttcgtatttattaatgt |
230 |
Q |
| |
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|||||||||| |||||||||||| |
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| T |
33633813 |
atactccttttagatttattaatgt |
33633789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 18264749 - 18264654
Alignment:
| Q |
6 |
agtgagaagaatcggagatcattatacatggggtaataaccaagctagtggagatagaatctattataagatagacagatttattgctaacactag |
101 |
Q |
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|||||||| |||||||||| ||||||| ||| ||||||||||| ||| |||||||||||| |||| ||||||||||||||||||||||| ||||| |
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| T |
18264749 |
agtgagaacaatcggagattattatacttggtgtaataaccaaactaatggagatagaatatattccaagatagacagatttattgctaatactag |
18264654 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 192
Target Start/End: Original strand, 25768000 - 25768134
Alignment:
| Q |
58 |
gatagaatctattataagatagacagatttattgctaacactagttggctgcaaaggttcaacaatgcagtgggtgaagttcttcctaaaggagtatctg |
157 |
Q |
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||||||||||||| ||||||||| | |||| ||||||||||||||||| | ||||| || |||| ||||||||||||| || ||||| ||||| || |
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| T |
25768000 |
gatagaatctattctaagatagatatatttcttgctaacactagttggttacaaagatttcgtaatgtagtgggtgaagtttatcttaaagtagtatatg |
25768099 |
T |
|
| Q |
158 |
atcactgtcctatatgtatggatatgtcttgtcct |
192 |
Q |
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|||||| | | ||| | |||||||| |||||||| |
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| T |
25768100 |
atcactatgccataagcttggatatggcttgtcct |
25768134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 3940781 - 3940558
Alignment:
| Q |
6 |
agtgagaagaatcggagatcattatacatggggtaataaccaagctagtggagatagaatctattataagatagacagatttattgctaacactagttgg |
105 |
Q |
| |
|
|||||||| |||||||||| ||||||| ||| ||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||| ||||||||| |
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| T |
3940781 |
agtgagaacaatcggagattattatacttggtgtaataaccaaactagtggagatagaatatattctaagatagatagatttattgctaatactagttgg |
3940682 |
T |
|
| Q |
106 |
ctgcaaaggttcaacaatgcagtgggtgaagttcttcctaaaggagtatctgatcactgtcctatatgtatggatatgtcttgtcctgcttctccaaaga |
205 |
Q |
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|
||||||| ||||| ||||||||||| ||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
3940681 |
ctgcaaaagttcaccaatgcagtggacgaagtgcttcctaaaggagcatctgatcactgtcctatatctatggatatgtcttgtcctgcttctcctaaga |
3940582 |
T |
|
| Q |
206 |
atactcctttcgtatttattaatg |
229 |
Q |
| |
|
|||||||||| ||||||||||| |
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| T |
3940581 |
atactccttttagatttattaatg |
3940558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 5666380 - 5666459
Alignment:
| Q |
26 |
attatacatggggtaataaccaagctagtggagatagaatctattataagatagacagatttattgctaacactagttgg |
105 |
Q |
| |
|
|||| |||||| | ||||||||||| ||||| ||||||||||||| ||||||||| || |||||||||| ||||| |||| |
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| T |
5666380 |
attacacatggtgcaataaccaagcaagtggtgatagaatctattctaagatagataggtttattgctagcactacttgg |
5666459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 55714459 - 55714412
Alignment:
| Q |
58 |
gatagaatctattataagatagacagatttattgctaacactagttgg |
105 |
Q |
| |
|
||||||||||||| |||||| || |||||| ||||||||||||||||| |
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| T |
55714459 |
gatagaatctattctaagatggatagatttcttgctaacactagttgg |
55714412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 171
Target Start/End: Original strand, 40950996 - 40951105
Alignment:
| Q |
62 |
gaatctattataagatagacagatttattgctaacactagttggctgcaaaggttcaacaatgcagtgggtgaagttcttcctaaaggagtatctgatca |
161 |
Q |
| |
|
||||||||| ||||||||| || ||| |||||||||||| |||| | || || |||| |||| |||||||||||| ||||||||||||||||||||| |
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|
| T |
40950996 |
gaatctattctaagatagataggtttcttgctaacactaattggttacatagtttcagtaatgtagtgggtgaagtatatcctaaaggagtatctgatca |
40951095 |
T |
|
| Q |
162 |
ctgtcctata |
171 |
Q |
| |
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||||| |||| |
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| T |
40951096 |
ctgtcatata |
40951105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 27186918 - 27186821
Alignment:
| Q |
13 |
agaatcggagatcattatacatggggtaataaccaagctagtggagatagaatctattataagatagacagatttattgctaacactagttggctgca |
110 |
Q |
| |
|
||||| |||||| |||| | |||| ||||||||||||| ||||| |||| ||| |||| ||||||||| || |||||||||||||||| |||| |||| |
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|
| T |
27186918 |
agaataggagattattacaaatggtgtaataaccaagcaagtggtgatataatatattctaagatagataggtttattgctaacactacttgggtgca |
27186821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 1163249 - 1163142
Alignment:
| Q |
63 |
aatctattataagatagacagatttattgctaacactagtt-ggctgcaaaggttcaacaatgcagtgggtgaagttcttcctaaaggagtatctgatca |
161 |
Q |
| |
|
|||||||| ||||||||| |||||| |||| |||||||||| || | ||||| || | |||| | |||||||||| |||||||||||||| |||||| |
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|
| T |
1163249 |
aatctattctaagatagatagatttcttgccaacactagtttggttacaaagttttagtaatgtaatgggtgaagtgtatcctaaaggagtatttgatca |
1163150 |
T |
|
| Q |
162 |
ctgtccta |
169 |
Q |
| |
|
|| ||||| |
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|
| T |
1163149 |
ctttccta |
1163142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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