View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17209_high_64 (Length: 240)

Name: NF17209_high_64
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17209_high_64
NF17209_high_64
[»] chr8 (5 HSPs)
chr8 (25-100)||(41805146-41805221)
chr8 (157-222)||(41804776-41804841)
chr8 (94-156)||(41805049-41805111)
chr8 (94-156)||(41798656-41798718)
chr8 (163-222)||(41798383-41798442)


Alignment Details
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 41805221 - 41805146
Alignment:
Q  25 atagtttcatgaaaagcttcattgtcagcggccattgtttcttctgcagtagaaatcctgatttgaagtgctctct 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41805221 atagtttcatgaaaagcttcattgtcagcggccattgttgcttctgcagtagaaatcctgatttgaagtgctctct 41805146  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 41804841 - 41804776
Alignment:
Q  157 gttaacttgttcatattctttattcaaattctgatatgcatctgctcgttctgctaatgttctctg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41804841 gttaacttgttcatattctttattcaaattctgatatgcatctgctcgttctgctaatgttctctg 41804776  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 41805111 - 41805049
Alignment:
Q  94 gctctctcccttttcagttagcaattgttctttgtcccggatattttggtttgacaggcgaag 156  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  41805111 gctctctcccttttcacttagcaattgttctttgtcccggatattttggtttgacaagcgaag 41805049  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 41798718 - 41798656
Alignment:
Q  94 gctctctcccttttcagttagcaattgttctttgtcccggatattttggtttgacaggcgaag 156  Q
    ||||||| |||||||| |||||||||||||| |  ||||||  ||||||||||||||||||||    
T  41798718 gctctcttccttttcacttagcaattgttctgtaacccggagcttttggtttgacaggcgaag 41798656  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 41798442 - 41798383
Alignment:
Q  163 ttgttcatattctttattcaaattctgatatgcatctgctcgttctgctaatgttctctg 222  Q
    ||||| |||||||| |||||| ||||||||||||||| || ||||| | |||||||||||    
T  41798442 ttgtttatattcttcattcaacttctgatatgcatcttcttgttcttccaatgttctctg 41798383  T

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