View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_high_65 (Length: 240)
Name: NF17209_high_65
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_high_65 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 53346222 - 53346454
Alignment:
| Q |
1 |
tgtcaatattttcatgtgcttaattttctaagataactgttgccaacatctttagctctacatagcagaatgtgtgtgcgagttagcaacatcattatat |
100 |
Q |
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| T |
53346222 |
tgtcaatattttcatgtgcttaattttctaagataac----------atctttagctctacatagcagaatgtgtgtgcgagttagcaacatcattatat |
53346311 |
T |
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| Q |
101 |
aacaatagaatgatttgaaagacattcaatcttccaaca---taacgtggtaggaaaatccaataatcacctatttggatggattactccagttggtagt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
53346312 |
aacaatagaatgatttgaaagacattcaatcttccaacatactaacgtggtaggaaaatccaataatcacctatttggatggtttactccagttggtagt |
53346411 |
T |
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| Q |
198 |
gtagatgtaggacttgcgtggcattaatgtattgagttctgtg |
240 |
Q |
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| T |
53346412 |
gtagatgtaggacttgcgtggcattaatgtattgagttctgtg |
53346454 |
T |
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