View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_11 (Length: 587)
Name: NF17209_low_11
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 2e-69; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 98 - 342
Target Start/End: Complemental strand, 30739134 - 30738889
Alignment:
| Q |
98 |
aaataaccacagaaatgcatgaatcaagttaatgaagaaagtagataccaaaattggagaacaagaaatacttacattaaccaccattggggcaaatggc |
197 |
Q |
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| T |
30739134 |
aaataatcacagaaatgcatgaatcaatgtaatgaagaaagtagatgacaaaaatggggaacaagatatacttacattgaccaccattggggcaaatggc |
30739035 |
T |
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| Q |
198 |
tttgattctttttcttgctcaactggaattgatgggtaactcacaccttgaacttggaatttgatctgccatgcag-taaccaaatttttggttcgtctt |
296 |
Q |
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| T |
30739034 |
tttgattcttttgcttgctcaactggaatcgttgggtaactcacacttagaacttggaatctgatctgcaatgttgttaaccaaattttagtttcatctt |
30738935 |
T |
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| Q |
297 |
cgatgtttaagcatacaattgagataaaatgaaaaggagcctaacc |
342 |
Q |
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| T |
30738934 |
cgttgtccaagcatacaattgagataaaaggaaaaggagtctaacc |
30738889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 34519434 - 34519369
Alignment:
| Q |
1 |
gaaacaatgtgaaaagcgaaaataatgtgatattgatatcatggttttggttttgatcatccgtga |
66 |
Q |
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| T |
34519434 |
gaaacaatgtgaaaagcgaaaataatgtgatattgatatcatggttttggttttgatcatccgtga |
34519369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 495 - 565
Target Start/End: Complemental strand, 30738736 - 30738666
Alignment:
| Q |
495 |
atgtggatatgcttttatattatgttccttgttcacccaaaagtaaaactggatagaggcggcgtcaccta |
565 |
Q |
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| T |
30738736 |
atgtggatatgcttgtgtattatgttcgtagttcacccaaaagtaaaattggatagaagcagtgtcaccta |
30738666 |
T |
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