View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_12 (Length: 586)
Name: NF17209_low_12
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 10 - 586
Target Start/End: Complemental strand, 35617449 - 35616873
Alignment:
| Q |
10 |
gaagaatatcatcaacaacggtatgaggtaaggccaaacagaagtggataccaagttactataaagtataaacctattggaaatccatatttgacataag |
109 |
Q |
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| T |
35617449 |
gaagaatatcatcaacaacggtatgaggtaaggccaaacagaagtggataccaagttactataaagtataaacctattggaaatccatatttgacataag |
35617350 |
T |
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| Q |
110 |
caattggttttgaagatgacttatcctttttattgctaaaaagtataaaatgtgcaggctgcctctacactatatggtcctcacacattatcagcgtaca |
209 |
Q |
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| T |
35617349 |
caattggttttgaaggtgacttatcctttttattgctaaaaagtataaaatgtgcaggctgcctctacactatatggtcctcacacattatcagcgtaca |
35617250 |
T |
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| Q |
210 |
tccaagaattcaacaaactagcacaagcaatggctaaaggcgataaaatatatggaaatggtacttccccaccagatcttttatctgtacaaaaaagctt |
309 |
Q |
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| T |
35617249 |
tccaagaattcaacaaactagcacaagcaatggctaaaggcgataaaatctatggaaatggtacttccccaccagatcttttatctgtacaaaaaagctt |
35617150 |
T |
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| Q |
310 |
cttacttgatccctttggagacacaactcctgacggaattaaactcggtgacattaaagaagatatagcatttccaggaagcggttattttacaaaggga |
409 |
Q |
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| T |
35617149 |
cttacttgatccctttggagacacaactcctgacggaattaaactcggtgacattaaagaagatatagcatttccaggaagcggttattttacaaaggga |
35617050 |
T |
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| Q |
410 |
gataaaccaagtgctacattctggagtgcaaatccaagatatgatcttctaacagaaggcacatatgctgtagtggaaatgcttcaaggggaaagatgga |
509 |
Q |
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| T |
35617049 |
gataaaccaagtgctacattctggagtgcaaatccaagatatgatcttctaacagaaggcacatatgctgtagtggaaaggcttcaaggggaaagatgga |
35616950 |
T |
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| Q |
510 |
tttctgttcaagatgatgatgacttaagcttgtttttcaagtggaaagtagacaatacttcctttcatggtttcgct |
586 |
Q |
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| T |
35616949 |
tttctgttcaagatgatgatgacttaagcttgtttttcaggtggaaagtagacaatacttcctttcatggtttcgct |
35616873 |
T |
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