View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_13 (Length: 552)
Name: NF17209_low_13
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 9e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 344 - 525
Target Start/End: Complemental strand, 43238457 - 43238276
Alignment:
| Q |
344 |
gtggttggatgcctgtgtttgaagataaagcaattaaatttctaaggaatacagaaccaaccaccgtaacaccaactttaatgctttcatagctcaaagt |
443 |
Q |
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| T |
43238457 |
gtggttggatgcctgtgtttgaagataaagcaattaaatttctaaggaatacagaaccaaccaccgtaacaccaactttaatgctttcatagctcaaagt |
43238358 |
T |
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| Q |
444 |
atatttctatttcatgctaacaaatgtctaaggacattgtttaagaaatttatgaaaaaattgtcttaaaaatattagttaa |
525 |
Q |
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| T |
43238357 |
atatttctatttcatgctaacaaatgtctaacgacattgtttaagaaatttatgaaaaaattgtcttaaaaatattagttaa |
43238276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 56 - 281
Target Start/End: Complemental strand, 43238744 - 43238520
Alignment:
| Q |
56 |
atggttttatgagctgagaaatctatnnnnnnnntatataatgaaaatgaaaatgcaatcaaggtgtgtcagaagatacaaacagctgaaaaacgaggaa |
155 |
Q |
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| T |
43238744 |
atggttttatgagctgagaaatctataaaaaaa-tatataatgaaaatgaaaatgcaatcaaggtgtgtcagaagatacaaacagctgaaaaacgaggaa |
43238646 |
T |
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| Q |
156 |
acgtcttcttctataatgcttaattaattaattttttatttnnnnnnnnnnnnnnnnnnnnggaagatgatgatggacaagaaaacgggtggagggatct |
255 |
Q |
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| T |
43238645 |
acgtcttcttctataatgcttaattaattaattttttatttaaaaagaaaaaaatgaaaaaggaagatgatgatggacaagaaaacgggtggagggatct |
43238546 |
T |
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| Q |
256 |
cattgctcaattcttctataaatatc |
281 |
Q |
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| T |
43238545 |
cattgctcaattcttctataaatatc |
43238520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 344 - 432
Target Start/End: Complemental strand, 25415615 - 25415527
Alignment:
| Q |
344 |
gtggttggatgcctgtgtttgaagataaagcaattaaatttctaaggaatacagaaccaaccaccgtaacaccaactttaatgctttca |
432 |
Q |
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| T |
25415615 |
gtggttggatgcccgagtttgaagataaagcaattaaattgccaaggaaaacagaaccaactaccataacaccaactttaatgctttca |
25415527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 25415846 - 25415771
Alignment:
| Q |
117 |
aggtgtgtcagaagatacaaacagctgaaaaacgaggaaacgtcttcttctataatgcttaattaattaatttttta |
193 |
Q |
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| T |
25415846 |
aggtgtgtaagaagtcacaagcagctgaaaaacgaggaaacgtcttcttctacaaagtttaa-taattaattattta |
25415771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 492
Target Start/End: Original strand, 4066369 - 4066405
Alignment:
| Q |
457 |
atgctaacaaatgtct-aaggacattgtttaagaaat |
492 |
Q |
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| T |
4066369 |
atgctaacaaatgtcttaaggacattgtttaagaaat |
4066405 |
T |
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