View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_15 (Length: 539)
Name: NF17209_low_15
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Original strand, 2466416 - 2466946
Alignment:
| Q |
1 |
aacattcacctctttcacccctttcttcttcacaaactcagcatacataacacctctttccttcaaaaaatcctttccagcaacataaacctcaacagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466416 |
aacattcacctctttcacccctttcttcttcacaaactcagcatacataacacctctttccttcaaaaaatcctttccagcaacataaacctcaacagca |
2466515 |
T |
|
| Q |
101 |
ggaaacttcaaccaaacactctcactcacatcatctttctcaaaattacaaccnnnnnnnttgcggtccgaatcttcaggcaaactcaatctccaaaaca |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
2466516 |
ggaaacttcaaccaaacactctcactcacatcatctttctcaaaattacaaccaaaaaaatcgcggtccgaatcttcaggcaaactcaatctccaaaaca |
2466615 |
T |
|
| Q |
201 |
tatcattcattttcacatcctcaacacctccttctttctccatctctttctcagtccttttctcactcccaaaataaggatgtataagtataaccccttt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2466616 |
tatcattcattttcacatcctcaacacctccttcttcctccatctctttctcagtccttttctcactcccaaaataaggatgtataagcataaccccttt |
2466715 |
T |
|
| Q |
301 |
aatcttcacaggacaaaacccatcattttgaatagctttaacagcaacataatgagaaatgttaccaccagcactatcaccagagagaaaaacatttgat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466716 |
aatcttcacaggacaaaacccatcattttgaatagctttaacagcaacataatgagaaatgttaccaccagcactatcaccagagagaaaaacatttgat |
2466815 |
T |
|
| Q |
401 |
aaatcagcatgtcgtagaaacggttcggttttcacattttcaccaagccattcaagtgatgagtaacaatcttcataagctattggaagacgatgctccg |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2466816 |
aaatcagcatgtcgtagaaacggttcggttttcacattttcaccaagccattcaagtgatgagtaacaatcttcataagctattggaagacgattctccg |
2466915 |
T |
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| Q |
501 |
gtgctaaccggtaatcaacagagagaataat |
531 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2466916 |
gtgctaaccggtaatcaacagagagaataat |
2466946 |
T |
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