View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_16 (Length: 539)
Name: NF17209_low_16
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 263 - 529
Target Start/End: Complemental strand, 54242503 - 54242237
Alignment:
| Q |
263 |
gtgactgagtggttataattaatagaattcgaaatcgtgtccactctcctgttaggtaaagacaagaaataaatctttagacggaatcactttacgccaa |
362 |
Q |
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| T |
54242503 |
gtgactgagtggttatcattaatagaattcgaaatcgtgtccactctcctgttaggtaaagacaagaaataaatctttagacggaatcactttacgccaa |
54242404 |
T |
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| Q |
363 |
agtcaagcaacttattaatt-caatgatcttgtttagaatactagtaaacatcactatatatattcgccctaattctctaattattcagtttaagtatgt |
461 |
Q |
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| T |
54242403 |
agtcaagcaacttattaatttcaatgatcttgtttagaatactagtaa-catcactatatatattcgccctaattctctaattattcagtttaagtatgt |
54242305 |
T |
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| Q |
462 |
tatcaacttctcgttactatcactagattttgatatggacaacttcaatttgattgcttcgagtatta |
529 |
Q |
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| T |
54242304 |
tatcaacttctcgttactatcactagattttgatatggacaacttcaatttgattgcttcgagtatta |
54242237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 54242743 - 54242552
Alignment:
| Q |
18 |
cttcattgtaacatgaagcacttaccattaccataccatatgaatatggtacacgatgctcattgtggtagtgggttgaattgttttctcctttttcttt |
117 |
Q |
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| T |
54242743 |
cttcattgtaacatgaagcacttaccattaccata-----tgaatatggtacacgatgctcattgtggtagtgggttgaattgttttctcctttttcttt |
54242649 |
T |
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| Q |
118 |
taaaagtgtacagttttctattagagaccgtatacttttatatatcttatagacactaagataaaaaggaattaaggaacacatgggtgattatgat |
214 |
Q |
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| T |
54242648 |
taaaagtgtatagttttctattagaggccgtatacttttatatatcttatagacactaagataaaaaggaattaaggaacacatgggtgattatgat |
54242552 |
T |
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