View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_18 (Length: 492)
Name: NF17209_low_18
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 5887669 - 5888160
Alignment:
| Q |
1 |
taaaaattcgcggaaacaatggccttttcttcttctttccacttttcacatctggcgaggatccattttcgttgtttgcatgaacataagacttaggact |
100 |
Q |
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| T |
5887669 |
taaaaattcgcggaaacaatgactttttcttcttctttccacttttcacatctggcgaggatccattttcgttgtttgcatgaacataagacttaggact |
5887768 |
T |
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| Q |
101 |
tgaaaagtaatgtacaggaatagtttcactatgattttgatcaagtttaccactatggtttatgttctggtttactacattttggcctatttcaccggct |
200 |
Q |
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| T |
5887769 |
tgaaaagtaatgtacaggaatagtttcactatgattttgatcaagtttaccactatggtttatgttctggtttactacattttggcctatttcaccggct |
5887868 |
T |
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| Q |
201 |
tttctccgttgtccatgttctgctctccactttcttaattcttgctctacacctaattttccttcccttgccttctcagatttatccattgcaatcttca |
300 |
Q |
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| T |
5887869 |
tttctccgttgtccatgttctgctctccactttcttaattcttgctctacacctaattttccttcccttgccttctcagatttatccatagcaatcttca |
5887968 |
T |
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| Q |
301 |
atgattcccttctagcaactatctctttgttcacttcattcaacttctccattgttttcaattcagtctccttagctatatcgatctcagaatttgccgt |
400 |
Q |
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| T |
5887969 |
atgattcccttctagcaactatttctttgttcacttcattcaacttctccattgttttcaattcagtctccttagctatatcgatctcagaatttgccgt |
5888068 |
T |
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| Q |
401 |
tgcaactctcgaattggctctttcttctgcatcatgaacttgtttcgttatacgatagtactcttcaactgatagtatcacaccatttgatg |
492 |
Q |
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| T |
5888069 |
tgcaactctcgaattggctctttcttctgcatcatgaacttgtttcgttatacgatagtactcttcaactgatagtatcacaccatttgatg |
5888160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 192 - 378
Target Start/End: Complemental strand, 46807025 - 46806839
Alignment:
| Q |
192 |
tcaccggcttttctccgttgtccatgttctgctctccactttcttaattcttgctctacacctaattttccttcccttgccttctcagatttatccattg |
291 |
Q |
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||||| || ||||||||||| ||| ||| ||||||||| |||| | |||||| |||||||||||||| |||||| |||||||||||| ||| ||||||| |
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| T |
46807025 |
tcaccagcctttctccgttgctcattttcagctctccaccttctaagttcttgttctacacctaatttaccttcctttgccttctcagctttttccattg |
46806926 |
T |
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| Q |
292 |
caatcttcaatgattcccttctagcaactatctctttgttcacttcattcaacttctccattgttttcaattcagtctccttagcta |
378 |
Q |
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| T |
46806925 |
ccatcttcaaggattcccttctagcagctatctctctattcacttcatccaacttctcgaaggatttcaattcagactccttagcta |
46806839 |
T |
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