View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17209_low_19 (Length: 456)

Name: NF17209_low_19
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17209_low_19
NF17209_low_19
[»] chr7 (15 HSPs)
chr7 (87-446)||(12820013-12820372)
chr7 (20-97)||(12820616-12820693)
chr7 (97-198)||(19351408-19351509)
chr7 (97-198)||(19779208-19779309)
chr7 (98-138)||(15572348-15572388)
chr7 (91-198)||(19888074-19888181)
chr7 (97-140)||(22028261-22028304)
chr7 (100-138)||(13417351-13417389)
chr7 (307-405)||(19326123-19326221)
chr7 (84-138)||(19326396-19326450)
chr7 (305-367)||(19344751-19344813)
chr7 (94-142)||(19721618-19721666)
chr7 (332-367)||(19374626-19374661)
chr7 (100-132)||(1986399-1986431)
chr7 (94-138)||(22080471-22080515)
[»] chr6 (6 HSPs)
chr6 (89-189)||(14748991-14749091)
chr6 (94-138)||(6935641-6935685)
chr6 (307-367)||(24254602-24254662)
chr6 (100-138)||(6954954-6954992)
chr6 (94-138)||(6943377-6943421)
chr6 (94-138)||(24254846-24254890)
[»] chr4 (1 HSPs)
chr4 (100-143)||(2910630-2910673)


Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 87 - 446
Target Start/End: Complemental strand, 12820372 - 12820013
Alignment:
Q  87 gcttaggttcacatttggttatgataattcaactgacacttacaaggtggtggccttttcttccaaagaggtgaaggtttgtagtttacgtgataatgtt 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12820372 gcttaggttcacatttggttatgataattcaactgacacttacaaggtggtggccttttcttccaaagaggtgaaggtttgtagtttacgtgataatgtt 12820273  T
Q  187 tggagaaatattagttttcatgttgttatttatcttggcattatgtttaatgaaggtgtgtatttgaatggcactgtttactggttttccaatccaaata 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12820272 tggagaaatattagttttcatgttgttatttatcttggcattatgtttaatgaaggtgtgtatttgaatggcactgtttactggttttccaatccgaata 12820173  T
Q  287 agagttttaagtatagtgagaaggattttactgttgaacaacttatgattatctcccttgatcttagtaccgagacatacacgcgcttgttgccccctcg 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  12820172 agagttttaagtatagtgagaaggattttactgttgaacaacttatgattatctcccttgatcttagtaccgagatatacacgcgcttgctgccccctcg 12820073  T
Q  387 tgaggttgatgaagtgccagttgttcaacaaagtcttgctgtattaagggaccgcctttg 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12820072 tgaggttgatgaagtgccagttgttcaacaaagtcttgctgtattaagggaccgcctttg 12820013  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 12820693 - 12820616
Alignment:
Q  20 cagccactaggaaaatatctgaaagattatgatcttttcaccaacccctaaagcctgtaagtgccaggcttaggttca 97  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  12820693 cagccactaggaaaatatctgaaagattaggatcttttcaccgaccccgaaagcttgtaagtgccaggcttaggttca 12820616  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 97 - 198
Target Start/End: Complemental strand, 19351509 - 19351408
Alignment:
Q  97 acatttggttatgataattcaactgacacttacaaggtggtggccttttcttccaaagaggtgaaggtttgtagtttacgtgataatgtttggagaaata 196  Q
    |||||||| ||||||| ||||| ||||||||| ||||||||| |||    | |||| |||||||| |||| ||||||  ||||||||||||||||| |||    
T  19351509 acatttggctatgatatttcaaatgacacttataaggtggtgtcctacaatgccaatgaggtgaaagtttttagtttgagtgataatgtttggagagata 19351410  T
Q  197 tt 198  Q
    ||    
T  19351409 tt 19351408  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 97 - 198
Target Start/End: Original strand, 19779208 - 19779309
Alignment:
Q  97 acatttggttatgataattcaactgacacttacaaggtggtggccttttcttccaaagaggtgaaggtttgtagtttacgtgataatgtttggagaaata 196  Q
    |||||||| ||||||| ||||| ||||||||| |||||||||||||||||| || | ||||| ||  |||  |||||  |||||||| |||||||| |||    
T  19779208 acatttggatatgatatttcaaatgacacttataaggtggtggccttttctgccgacgaggtcaaaattttcagtttgagtgataatatttggagagata 19779307  T
Q  197 tt 198  Q
    ||    
T  19779308 tt 19779309  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 15572388 - 15572348
Alignment:
Q  98 catttggttatgataattcaactgacacttacaaggtggtg 138  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  15572388 catttggttatgataattcaaccgacacttacaaggtggtg 15572348  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 19888181 - 19888074
Alignment:
Q  91 aggttcacatttggttatgataattcaactgacacttacaaggtggtggccttttcttccaaagaggtgaaggtttgtagtttacgtgataatgtttgga 190  Q
    ||||| |||||||| ||||||| ||||| ||||||||| ||||||||||| |||||| |  | ||||| ||  ||| ||||||  |||||||| ||||||    
T  19888181 aggttaacatttggatatgatatttcaaatgacacttataaggtggtggctttttctgcagacgaggtcaaactttttagtttgagtgataatatttgga 19888082  T
Q  191 gaaatatt 198  Q
    || |||||    
T  19888081 gagatatt 19888074  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 22028261 - 22028304
Alignment:
Q  97 acatttggttatgataattcaactgacacttacaaggtggtggc 140  Q
    |||||||||||||||||||||||||| ||||||||||| |||||    
T  22028261 acatttggttatgataattcaactgatacttacaaggtagtggc 22028304  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 13417389 - 13417351
Alignment:
Q  100 tttggttatgataattcaactgacacttacaaggtggtg 138  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  13417389 tttggttatgataattcaacggacacttacaaggtggtg 13417351  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 405
Target Start/End: Complemental strand, 19326221 - 19326123
Alignment:
Q  307 aaggattttactgttgaacaacttatgattatctcccttgatcttagtaccgagacatacacgcgcttgttgccccctcgtgaggttgatgaagtgcca 405  Q
    |||||| |||| || || ||| ||||||||||||||||||||||| |||| |||||||||| ||  ||   | |||||||||  |||||||||||||||    
T  19326221 aaggatattaccgtcgagcaatttatgattatctcccttgatcttggtactgagacatacaagcaatttcagacccctcgtggtgttgatgaagtgcca 19326123  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 19326450 - 19326396
Alignment:
Q  84 caggcttaggttcacatttggttatgataattcaactgacacttacaaggtggtg 138  Q
    |||||| |||||||||||||| ||||||||||||||||  ||||| |||||||||    
T  19326450 caggctcaggttcacatttgggtatgataattcaactggaacttataaggtggtg 19326396  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 19344813 - 19344751
Alignment:
Q  305 agaaggattttactgttgaacaacttatgattatctcccttgatcttagtaccgagacataca 367  Q
    |||||||| |||||||||   || || |||||||||||||||||||| |||||||||||||||    
T  19344813 agaaggatattactgttgggaaatttgtgattatctcccttgatcttggtaccgagacataca 19344751  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 19721618 - 19721666
Alignment:
Q  94 ttcacatttggttatgataattcaactgacacttacaaggtggtggcct 142  Q
    ||||||||||||||||||| ||||||| | ||||| |||||||||||||    
T  19721618 ttcacatttggttatgatatttcaactaaaacttataaggtggtggcct 19721666  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 367
Target Start/End: Original strand, 19374626 - 19374661
Alignment:
Q  332 tgattatctcccttgatcttagtaccgagacataca 367  Q
    |||||||||||||||||||| |||||||||||||||    
T  19374626 tgattatctcccttgatcttggtaccgagacataca 19374661  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 1986431 - 1986399
Alignment:
Q  100 tttggttatgataattcaactgacacttacaag 132  Q
    |||||||||||||||||||| ||||||||||||    
T  1986431 tttggttatgataattcaacagacacttacaag 1986399  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 22080471 - 22080515
Alignment:
Q  94 ttcacatttggttatgataattcaactgacacttacaaggtggtg 138  Q
    ||||| |||||||||||||||||||| || ||||| |||||||||    
T  22080471 ttcacgtttggttatgataattcaacagaaacttataaggtggtg 22080515  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 14748991 - 14749091
Alignment:
Q  89 ttaggttcacatttggttatgataattcaactgacacttacaaggtggtggccttttcttccaaagaggtgaaggtttgtagtttacgtgataatgtttg 188  Q
    ||||||| |||||||| ||||||| |||||  |||||||| ||||||||||||||||||  | | ||||| || ||||  |||||| |||||||||||||    
T  14748991 ttaggttaacatttggatatgatatttcaaacgacacttataaggtggtggccttttctatcgatgaggtcaaagttttcagtttaagtgataatgtttg 14749090  T
Q  189 g 189  Q
    |    
T  14749091 g 14749091  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 6935685 - 6935641
Alignment:
Q  94 ttcacatttggttatgataattcaactgacacttacaaggtggtg 138  Q
    ||||| |||||||||||||||||||| |||||||||||| |||||    
T  6935685 ttcacttttggttatgataattcaacagacacttacaagttggtg 6935641  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 367
Target Start/End: Complemental strand, 24254662 - 24254602
Alignment:
Q  307 aaggattttactgttgaacaacttatgattatctcccttgatcttagtaccgagacataca 367  Q
    |||||| |||| ||||| ||| | ||||||||||||||||||||| |||| ||||||||||    
T  24254662 aaggatattaccgttgagcaattcatgattatctcccttgatcttggtactgagacataca 24254602  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 6954992 - 6954954
Alignment:
Q  100 tttggttatgataattcaactgacacttacaaggtggtg 138  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  6954992 tttggttatgataattcaacagacacttacaagatggtg 6954954  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 6943421 - 6943377
Alignment:
Q  94 ttcacatttggttatgataattcaactgacacttacaaggtggtg 138  Q
    ||||| ||||||||||||||||||||  ||||||||||| |||||    
T  6943421 ttcacttttggttatgataattcaacaaacacttacaagttggtg 6943377  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 24254890 - 24254846
Alignment:
Q  94 ttcacatttggttatgataattcaactgacacttacaaggtggtg 138  Q
    ||||||||||| ||||||||||||||||  ||||| |||||||||    
T  24254890 ttcacatttgggtatgataattcaactggaacttataaggtggtg 24254846  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 2910630 - 2910673
Alignment:
Q  100 tttggttatgataattcaactgacacttacaaggtggtggcctt 143  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||||    
T  2910630 tttggttatgataattcaactcacacttataaggttgtggcctt 2910673  T

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