View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_21 (Length: 444)
Name: NF17209_low_21
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 9 - 427
Target Start/End: Original strand, 805372 - 805790
Alignment:
| Q |
9 |
gagatgaaaacttcgagctatgaagtaccgacacagacatcgatactgaacattacacgatcactgacagtgacacactgacacaaatacaaccttgaaa |
108 |
Q |
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|||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
805372 |
gagaagaagacttcgagctatgaaataccgacacagacatcgatactgaacattacacgatcactgacagtgatacactgacacaaatacaaccttgaaa |
805471 |
T |
|
| Q |
109 |
gttgaaaccatgacataattaatttagttgtaggtgtgagatatcaaaagattttagatccaaatgagataattaatgtagtttggtaaagtatatgtga |
208 |
Q |
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| T |
805472 |
gttgaaaccatgacataattaatttagttgtaggtgtgagatatcaaaagattttagatccaaatgagataattaatgtagtttggtaaagtatatgtga |
805571 |
T |
|
| Q |
209 |
tttaatgctcagagtgcagcctacctgcctatagtagtgtgtgttataaattggctcttcgcagctattttatcatgctcttcacaggacatttgtagca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
805572 |
tttaatgctcagagtgcagcctacctgcctatagtagtgtgtgttataaattggctcttcgcagctattttatcatgctcttcacaggacatttgtagca |
805671 |
T |
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| Q |
309 |
tcttacaaccctgtcacaaagaagtagggtgaattaatcacctcggattaatctgagacacatgaaattcttttagtgcttgttttggatgcaagctgta |
408 |
Q |
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| T |
805672 |
tcttacaaccctgtcaaaaagaagtagggtgaattaatcacctcggattaatctgagacacatgaaattcttttagtgcttgttttggatgcaagctgta |
805771 |
T |
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| Q |
409 |
gtttcccaatgttgaagct |
427 |
Q |
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| T |
805772 |
gtttcccaatgttgaagct |
805790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 1266294 - 1266242
Alignment:
| Q |
127 |
ttaatttagttgtaggtgtgagatatcaaaagattttagatccaaatgagata |
179 |
Q |
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| T |
1266294 |
ttaatttagttgtaggtgtgagatatcaaaagattttagatctaaatgagata |
1266242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 206 - 389
Target Start/End: Original strand, 36053791 - 36053975
Alignment:
| Q |
206 |
tgatttaatgctcagagtgcagcctacctgcctatagtagtgtgtgttataaattggctcttcgcagctattttatcatgctcttcacaggacatttgta |
305 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36053791 |
tgatttaatgctcagattgcagcctacctgcctatagt---gtgtgttataaattggctctttgcagctattttatcatgctcttcacaggacatttgta |
36053887 |
T |
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| Q |
306 |
gcatcttacaaccctgtcacaaagaagtagggt----gaattaatcacctcggattaatctgagacacatgaaattcttttagtgctt |
389 |
Q |
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|||||||||||||||||| | ||||| ||| ||||||||||||||||| ||| |||| |||| ||||||||||||||||| |
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| T |
36053888 |
gcatcttacaaccctgtccgggaaaagtaaggtcaaataattaatcacctcggataaatgtgagtcacaataaattcttttagtgctt |
36053975 |
T |
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