View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17209_low_22 (Length: 440)

Name: NF17209_low_22
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17209_low_22
NF17209_low_22
[»] chr6 (3 HSPs)
chr6 (139-302)||(1145292-1145455)
chr6 (298-422)||(1145121-1145245)
chr6 (11-143)||(1145496-1145629)
[»] chr1 (8 HSPs)
chr1 (167-302)||(18279422-18279557)
chr1 (298-420)||(8300496-8300621)
chr1 (305-420)||(18279614-18279730)
chr1 (299-411)||(8296936-8297042)
chr1 (238-302)||(8297090-8297154)
chr1 (166-302)||(8300668-8300804)
chr1 (47-84)||(27801560-27801597)
chr1 (47-84)||(30725023-30725060)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 139 - 302
Target Start/End: Complemental strand, 1145455 - 1145292
Alignment:
Q  139 tgacacaatcagttttggttttttatcaaatggatgataatcaatgtggctaagtttgataatattttgacgtttgttagaagtatgaaaagctttacac 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1145455 tgacacaatcagttttggttttttatcaaatggatgataatcaatgtggctaagtttgataatattttgacgtttgttagaagtatgaaaagctttacac 1145356  T
Q  239 tgaattttctcgagtctatcaagtatctggaggatagaatggaattaaaagggaacttagaaag 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1145355 tgaattttctcgagtctatcaagtatctggaggatagaatggaattaaaagggaacttagaaag 1145292  T

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Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 298 - 422
Target Start/End: Complemental strand, 1145245 - 1145121
Alignment:
Q  298 gaaagctttatgcggatttatctcgagtaaaatttcttgccttgttaatttcattttcaaagtttgaagcatgaaaaactctgtttaatattctgaaaat 397  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1145245 gaaagctttatgcggatttatctcgagtaaaatatcttgcctggttaatttcattttcaaagtttgaagcatgaaaaactctgtttaatattctgaaaat 1145146  T
Q  398 tttgctcttgatgtaacctctgctt 422  Q
    |||||||||||||||||||||||||    
T  1145145 tttgctcttgatgtaacctctgctt 1145121  T

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Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 1145629 - 1145496
Alignment:
Q  11 gaagaaacaaacaggccaaagttccatctttttatgatttcccaattgtgccctttcattgcatcataaaagacc-nnnnnnnnntacaccagaagtctg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||    
T  1145629 gaagaaacaaacaggccaaagttccatctttttatgatttcccaattgtgccctttcattgcatcataaaagaccaaaaaaaaaatacaccagaagtctg 1145530  T
Q  110 gaacgttgtgcatagctaacatgagagaatgaca 143  Q
    ||||||||||||||||||||||||||||||||||    
T  1145529 gaacgttgtgcatagctaacatgagagaatgaca 1145496  T

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Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 167 - 302
Target Start/End: Original strand, 18279422 - 18279557
Alignment:
Q  167 aatggatgataatcaatgtggctaagtttgataatattttgacgtttgttagaagtatgaaaagctttacactgaattttctcgagtctatcaagtatct 266  Q
    |||||||||||||||||||||| |||||||||||||||||||||| | || ||  ||| ||||||||||| |||||||||||||||||||| |||| | |    
T  18279422 aatggatgataatcaatgtggcaaagtttgataatattttgacgtatattggatatatcaaaagctttacgctgaattttctcgagtctattaagtcttt 18279521  T
Q  267 ggaggatagaatggaattaaaagggaacttagaaag 302  Q
    ||||||||||||||||||||||||||||||||||||    
T  18279522 ggaggatagaatggaattaaaagggaacttagaaag 18279557  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 298 - 420
Target Start/End: Complemental strand, 8300621 - 8300496
Alignment:
Q  298 gaaagctttatgcggatttatctcgagtaaaatttcttgccttgttaatttcattttcaaagtttgaagcatgaaaaactctg--tttaatattctgaaa 395  Q
    |||| ||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||    
T  8300621 gaaatctttacgcagatctatctcgagtaaaatttcttgccttgttaatttcattttcaaagtttgaagaatgaaaaactctgtctttaatattctgaaa 8300522  T
Q  396 attttgctcttgatg-taacctctgc 420  Q
    ||||||||| || || ||||||||||    
T  8300521 attttgctcatggtgttaacctctgc 8300496  T

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Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 305 - 420
Target Start/End: Original strand, 18279614 - 18279730
Alignment:
Q  305 ttatgcggatttatctcgagtaaaatttcttgccttgttaatttcattttcaaagtttgaagcatgaaaaactctgtttaatattctgaaaattttgctc 404  Q
    ||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| | ||||||    
T  18279614 ttatgcgtacttatctcgagtaaaatttcttggcttgttaatttcattttcaaagtttgaagcatgaaaaactgtctttaatattctgaaagtattgctc 18279713  T
Q  405 ttgatg-taacctctgc 420  Q
     ||||| ||||||||||    
T  18279714 atgatgttaacctctgc 18279730  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 299 - 411
Target Start/End: Complemental strand, 8297042 - 8296936
Alignment:
Q  299 aaagctttatgcggatttatctcgagtaaaatttcttgccttgttaatttcattttcaaagtttgaagcatgaaaaactctg--tttaatattctgaaaa 396  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||        |||||||||||||||||||||||  ||||| ||||||||||    
T  8297042 aaagctttatgcggatttatctctagtaaaatttcttgccttgttaatttc--------agtttgaagcatgaaaaactctgtatttaacattctgaaaa 8296951  T
Q  397 ttttgctcttgatgt 411  Q
    || ||||| ||||||    
T  8296950 ttctgctcatgatgt 8296936  T

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Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 8297154 - 8297090
Alignment:
Q  238 ctgaattttctcgagtctatcaagtatctggaggatagaatggaattaaaagggaacttagaaag 302  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  8297154 ctgaattttctcgagtctatcaagtctatggaggatagaatggaattaaaagggaacttagaaag 8297090  T

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Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 166 - 302
Target Start/End: Complemental strand, 8300804 - 8300668
Alignment:
Q  166 aaatggatgataatcaatgtggctaagtttgataatattttgacgtttgttagaagtatgaaaagctttacactgaattttctcgagtctatcaagtatc 265  Q
    |||||||||||||| || |||| |  ||| ||||||  ||||  ||||||||||  ||| |||| |||||| ||||||||||| ||||||||||||| |     
T  8300804 aaatggatgataattaaggtggttgtgttggataattctttgctgtttgttagatatatcaaaaactttacgctgaattttcttgagtctatcaagtcta 8300705  T
Q  266 tggaggatagaatggaattaaaagggaacttagaaag 302  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  8300704 tggaggatagagtggaattaaaagggaactcagaaag 8300668  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 27801560 - 27801597
Alignment:
Q  47 atttcccaattgtgccctttcattgcatcataaaagac 84  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  27801560 attttccaattgtaccctttcattgcatcataaaagac 27801597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 30725060 - 30725023
Alignment:
Q  47 atttcccaattgtgccctttcattgcatcataaaagac 84  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  30725060 attttccaattgtaccctttcattgcatcataaaagac 30725023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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