View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_23 (Length: 438)
Name: NF17209_low_23
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 10 - 407
Target Start/End: Original strand, 7802722 - 7803118
Alignment:
| Q |
10 |
attattctcatgttgtattgttgtatccaactccccatgtgaggctttcttgtttaatacacacaaccataagaatgacaaaagcttcttccgtagaatc |
109 |
Q |
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| T |
7802722 |
attattctcatgttgtattgttgtatccaactccccatgtgaggctttcttgtttaatacacacaaccataagaatgacaaaagcttcttccgtagaatc |
7802821 |
T |
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| Q |
110 |
cggcattggaacatgacttatgacttatgtatgtactagaactagaaagagctttttcttttaatctttttgactcaaactataactagaaagagcatca |
209 |
Q |
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| T |
7802822 |
cggcattggaacatgacttatgacttatgtatgtactagaactagaaagagctttttcttttaatctttttgactcaaactataactagaaagagcatca |
7802921 |
T |
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| Q |
210 |
accactaatttccccttcattattcttcatgtgctagctatttcccaacacttgtaatgccaaaaacattgtcaaatctgaatttatttttctcacttgt |
309 |
Q |
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| T |
7802922 |
accactaatttccccttcattattcttcatgtgctagctatttcccaacacttgtaatgccaaaaacattgtcaaatctgaatttatttttctcacttgt |
7803021 |
T |
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| Q |
310 |
taatactgccattcaatttcgattggctacatttgggagttccattccaattgcaatttgcatgattcctaatttagtcccaaatcgatccaatatag |
407 |
Q |
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| T |
7803022 |
taatgctgccattcaatttcgattggctacatttgggagttcaattccaattgcaatttgcatgattcctaa-ttagtcccaagtcgatccaatatag |
7803118 |
T |
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