View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_25 (Length: 437)
Name: NF17209_low_25
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 422
Target Start/End: Complemental strand, 23671011 - 23670607
Alignment:
| Q |
10 |
aagaatatgctatctgtctactaaatggatacttagccatttccggatgagaagtcagatagaaccataaaaccaacaccctacaaaaagatgaaccaca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23671011 |
aagaatatgctatctgtctactaaatggatacttagccatttccggatgagaagtcagatagaaccataaaaccaacaccctacaaaaagatgaaccaca |
23670912 |
T |
|
| Q |
110 |
ctttcctccttcccacatctgttcgaacaaagaatagaattagacgatatgattcctctacgaagcagattgtctttcgttggtaagagaatttgtaaca |
209 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23670911 |
ctttcctccttcccacacccgttcgaacaaagaatagaattagacg-------tcgtctacgaagcagattgtctttcgttggtaagagaatttgtaaca |
23670819 |
T |
|
| Q |
210 |
actgccaagtaaacaaagagaccttcaactaagccgctttattccaaacaatgtcataactgtcaaaactatccaccttctctacataagacaacttatg |
309 |
Q |
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|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||| |
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| T |
23670818 |
accgccaagcaaacaaagagaccttcaactaagccgctttattccaaacaatgtcataactgtcagaactatccaccttctctaaataagac-acttatg |
23670720 |
T |
|
| Q |
310 |
gtatacgctggtaactatatagctgttgcccgaatctaaactccggtcccatttgtcatcaacaccatcctagaaaaaatataagccttcttttgtcatc |
409 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23670719 |
gtatacgccggtaactatatagctgttgcccgaatctaaactccggtcccatttgtcatcaacaccatcctagaaaaaatgtaagccttcttttgtcatc |
23670620 |
T |
|
| Q |
410 |
tctactttctttt |
422 |
Q |
| |
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|||||||||||| |
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| T |
23670619 |
cctactttctttt |
23670607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 422
Target Start/End: Complemental strand, 24043287 - 24042883
Alignment:
| Q |
10 |
aagaatatgctatctgtctactaaatggatacttagccatttccggatgagaagtcagatagaaccataaaaccaacaccctacaaaaagatgaaccaca |
109 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24043287 |
aagaatatgctatctgtctactaaatggatacttagccatttccggatgagaagtcagatagaaccataaaaccaacaccctacaaaaagatgaaccaca |
24043188 |
T |
|
| Q |
110 |
ctttcctccttcccacatctgttcgaacaaagaatagaattagacgatatgattcctctacgaagcagattgtctttcgttggtaagagaatttgtaaca |
209 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24043187 |
ctttcctccttcccacacccgttcgaacaaagaatagaattagacg-------tcgtctacgaagcagattgtctttcgttggtaagagaatttgtaaca |
24043095 |
T |
|
| Q |
210 |
actgccaagtaaacaaagagaccttcaactaagccgctttattccaaacaatgtcataactgtcaaaactatccaccttctctacataagacaacttatg |
309 |
Q |
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|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||| |
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| T |
24043094 |
accgccaagcaaacaaagagaccttcaactaagccgctttattccaaacaatgtcataactgtcagaactatccaccttctctaaataagac-acttatg |
24042996 |
T |
|
| Q |
310 |
gtatacgctggtaactatatagctgttgcccgaatctaaactccggtcccatttgtcatcaacaccatcctagaaaaaatataagccttcttttgtcatc |
409 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24042995 |
gtatacgccggtaactatatagctgttgcccgaatctaaactccggtcccatttgtcatcaacaccatcctagaaaaaatgtaagccttcttttgtcatc |
24042896 |
T |
|
| Q |
410 |
tctactttctttt |
422 |
Q |
| |
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|||||||||||| |
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|
| T |
24042895 |
cctactttctttt |
24042883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 260
Target Start/End: Original strand, 9013113 - 9013260
Alignment:
| Q |
115 |
ctccttcccacatctgttcgaacaaagaatagaattagacgatatgattcctctacgaagcagattgtctttcgttggta--agagaatttgtaacaact |
212 |
Q |
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|||||| ||||| | | |||| ||||||||||| |||| ||| |||||||||| |||||||||| | || || ||| ||| || || |||||||||||| |
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| T |
9013113 |
ctcctttccacacccgctcgagcaaagaatagagttagccgacatgattcctcgacgaagcagagtatcctttgttagtataagtgattttgtaacaact |
9013212 |
T |
|
| Q |
213 |
gccaagtaaacaaagagaccttcaactaagccgctttattccaaacaa |
260 |
Q |
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||||| |||||||||||||||| | |||||| ||||||| |||||| |
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| T |
9013213 |
tccaagcaaacaaagagaccttctaataagccattttattctaaacaa |
9013260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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