View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17209_low_26 (Length: 428)

Name: NF17209_low_26
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17209_low_26
NF17209_low_26
[»] chr1 (18 HSPs)
chr1 (1-408)||(47775570-47775977)
chr1 (41-399)||(47771458-47771816)
chr1 (107-260)||(6525878-6526031)
chr1 (90-231)||(47710834-47710975)
chr1 (90-240)||(47715536-47715686)
chr1 (53-231)||(47700548-47700726)
chr1 (90-231)||(47743312-47743453)
chr1 (126-231)||(47757713-47757818)
chr1 (90-208)||(6514529-6514647)
chr1 (333-404)||(47757513-47757584)
chr1 (107-224)||(6502495-6502612)
chr1 (349-404)||(47715393-47715448)
chr1 (109-250)||(6510123-6510264)
chr1 (349-404)||(47710682-47710737)
chr1 (127-174)||(47679487-47679534)
chr1 (127-174)||(47691146-47691193)
chr1 (109-206)||(6497181-6497278)
chr1 (340-397)||(47743167-47743224)
[»] chr5 (4 HSPs)
chr5 (92-286)||(27367879-27368073)
chr5 (126-273)||(28826762-28826911)
chr5 (126-290)||(28859213-28859377)
chr5 (126-273)||(28843717-28843863)
[»] chr8 (2 HSPs)
chr8 (90-231)||(11225575-11225716)
chr8 (340-397)||(11225804-11225861)
[»] scaffold0341 (2 HSPs)
scaffold0341 (107-250)||(4147-4290)
scaffold0341 (107-250)||(11803-11946)


Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 47775570 - 47775977
Alignment:
Q  1 aattgattgatgggctaattgcattttggttatctaaacttgagcaaattattgcaggcatggaaatgctggagggaggggaaagcacaaaatatgatag 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  47775570 aattgattcatgggctaattgcattttggttatctaaacttgagcaaattattgcaggcatggaaatgctggagggaggggaaagcacacaatattatag 47775669  T
Q  101 atgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggc 200  Q
    || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47775670 atccagcattaaacaatatttcagcaaatgaaataatgagatgtatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggc 47775769  T
Q  201 tgctgttgcactcatgcttaatagttattctctcactctctcaataccttcaaaacctgcctatttttatggaagtggaactagaagcctacatgacatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47775770 tgctgttgcactcatgcttaatagttattctctcactctctcaataccttcaaaacctgcctatttttatggaagtggaactagaagcctacatgacatg 47775869  T
Q  301 gagttatgggctggcaatatagattcaacagtatcgggtgaatcgattaaccaggcttcaaatactgatccataccctcgataaatttcattcataaggt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  47775870 gagttatgggctggcaatatagattcaacagtatcgggtgaatcgattaaccaggcttcaaatactgatccataccctcgataaatttcattcataaggg 47775969  T
Q  401 tgatacct 408  Q
    || |||||    
T  47775970 tgttacct 47775977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 41 - 399
Target Start/End: Original strand, 47771458 - 47771816
Alignment:
Q  41 tgagcaaattattgcaggcatggaaatgctggagggaggggaaagcacaaaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgag 140  Q
    |||||||||| ||||||||||||| | ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47771458 tgagcaaattcttgcaggcatggagaagctggagagaggggaaggcacaaaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgag 47771557  T
Q  141 atgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgttgcactcatgcttaatagttattctctcactctc 240  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47771558 atgcatccatattggcttactttgtgttcaagaaaatgtagttgacagaccaaccatggctactgttgcactcatgcttaatagttattctctcactctc 47771657  T
Q  241 tcaataccttcaaaacctgcctatttttatggaagtggaactagaagcctacatgacatggagttatgggctggcaatatagattcaacagtatcgggtg 340  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||  ||||||||    
T  47771658 tcaataccttcaaaacctgcctatttttatggaagtggaaccagaagcctacaagacatggagttatgggctggcaatataggttcaacaacatcgggtg 47771757  T
Q  341 aatcgattaaccaggcttcaaatactgatccataccctcgataaatttcattcataagg 399  Q
    ||||| | ||||| ||||| ||||||||||||||||||||||| | |||||||||||||    
T  47771758 aatcggtgaaccacgcttccaatactgatccataccctcgatagaattcattcataagg 47771816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 107 - 260
Target Start/End: Original strand, 6525878 - 6526031
Alignment:
Q  107 cattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgt 206  Q
    |||||||||||  |||||  || |||||||||||||||||||| ||||  |||||||||||||||||||||| || |  ||| ||||| |||||| || |    
T  6525878 cattaaacaatgattcagtgaacgaaataatgagatgcatccacattgggttactttgtgttcaagaaaatgcagctagcaggccaactatggcttctat 6525977  T
Q  207 tgcactcatgcttaatagttattctctcactctctcaataccttcaaaacctgc 260  Q
    || ||| |||||||||||| |||||||||||||||| | ||||||  |||||||    
T  6525978 tgtactaatgcttaatagtcattctctcactctctcgagaccttccgaacctgc 6526031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 90 - 231
Target Start/End: Complemental strand, 47710975 - 47710834
Alignment:
Q  90 aaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacaga 189  Q
    |||||| |||||| || |||||| ||||  ||||  ||||||||||||||||||||| || ||||| ||||| ||||||||||||||| | ||||| |||    
T  47710975 aaatataatagatccatcattaagcaatggttcacaaaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgaaaga 47710876  T
Q  190 ccaaccatggctgctgttgcactcatgcttaatagttattct 231  Q
    ||||| |||||  | |||||||||||||||| ||||||||||    
T  47710875 ccaactatggcaaccgttgcactcatgcttagtagttattct 47710834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 90 - 240
Target Start/End: Complemental strand, 47715686 - 47715536
Alignment:
Q  90 aaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacaga 189  Q
    |||||| |||||| || |||||| ||||  ||||  ||||||||||||||||||||| || ||||| ||||| ||||||||||||||| | ||||| |||    
T  47715686 aaatataatagatccatcattaagcaatggttcacgaaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgaaaga 47715587  T
Q  190 ccaaccatggctgctgttgcactcatgcttaatagttattctctcactctc 240  Q
    |||| ||||||  | |||| ||||||||||| |||||||| | ||||||||    
T  47715586 ccaatcatggcaaccgttgtactcatgcttagtagttattatatcactctc 47715536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 53 - 231
Target Start/End: Complemental strand, 47700726 - 47700548
Alignment:
Q  53 tgcaggcatggaaatgctggagggagggga-aagcacaaaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccata 151  Q
    |||||||||||| |  |||||||||||| | || |||||| ||| |||||| || ||||||||||   ||||  ||||||||||||||||||||| || |    
T  47700726 tgcaggcatggagaaactggagggagggtacaatcacaaa-tataatagatccatcattaaacaacggttcacaaaatgaaataatgagatgcattcaca 47700628  T
Q  152 ttgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgttgcactcatgcttaatagttattct 231  Q
    |||| ||||| ||||||||||||||| | ||||| ||||||| ||||||  |  ||| ||||||||||| ||||||||||    
T  47700627 ttgctttactatgtgttcaagaaaatttggttgaaagaccaaacatggcaaccattgtactcatgcttagtagttattct 47700548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 90 - 231
Target Start/End: Complemental strand, 47743453 - 47743312
Alignment:
Q  90 aaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacaga 189  Q
    |||||| |||||| || |||||| ||||  ||||  ||||||||||||||||||||| || ||||| ||||| ||||||||||||||| | ||||| |||    
T  47743453 aaatataatagatccatcattaagcaatggttcacgaaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgaaaga 47743354  T
Q  190 ccaaccatggctgctgttgcactcatgcttaatagttattct 231  Q
    |||| ||||||  | |||| | ||||||||| ||||||||||    
T  47743353 ccaatcatggcaaccgttgtagtcatgcttagtagttattct 47743312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 47757818 - 47757713
Alignment:
Q  126 aaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgttgcactcatgcttaatagt 225  Q
    ||||||||||||||||||||| || ||||| ||||| ||||||||||||||| | ||||| ||||||||||||||  |  ||| ||||||||||| ||||    
T  47757818 aaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgaaagaccaaccatggcaaccattgtactcatgcttagtagt 47757719  T
Q  226 tattct 231  Q
    ||||||    
T  47757718 tattct 47757713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 6514647 - 6514529
Alignment:
Q  90 aaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacaga 189  Q
    |||||| |||||| || |||||||||||   |||  |||||| ||||||||||| ||||||||||  ||||||||||||||||| ||||||| |  ||||    
T  6514647 aaatatcatagatccaacattaaacaatgactcactaaatgagataatgagatgtatccatattggattactttgtgttcaagagaatgtagctagcaga 6514548  T
Q  190 ccaaccatggctgctgttg 208  Q
    |||||||||||| ||||||    
T  6514547 ccaaccatggcttctgttg 6514529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 333 - 404
Target Start/End: Complemental strand, 47757584 - 47757513
Alignment:
Q  333 atcgggtgaatcgattaaccaggcttcaaatactgatccataccctcgataaatttcattcataaggttgat 404  Q
    ||||||||||||||| ||||| ||||||| |||||| |||||||||||||| ||||||||||||||| ||||    
T  47757584 atcgggtgaatcgataaaccatgcttcaattactgacccataccctcgatagatttcattcataagggtgat 47757513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 6502612 - 6502495
Alignment:
Q  107 cattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgt 206  Q
    |||||||||||  ||||  |||||||||| | ||||| ||||||||||  ||||||||||||||||| ||| ||||  | ||||||||||||||| || |    
T  6502612 cattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatatagtaaatagaccaaccatggcttctat 6502513  T
Q  207 tgcactcatgcttaatag 224  Q
    || | | |||||||||||    
T  6502512 tgtagtgatgcttaatag 6502495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 404
Target Start/End: Complemental strand, 47715448 - 47715393
Alignment:
Q  349 aaccaggcttcaaatactgatccataccctcgataaatttcattcataaggttgat 404  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||||||||||| ||||    
T  47715448 aaccatgcttcaattactgatccataccctcgatagatttcattcataagggtgat 47715393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 250
Target Start/End: Complemental strand, 6510264 - 6510123
Alignment:
Q  109 ttaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgttg 208  Q
    |||||||||  ||||  |||||||||  | ||||| || |||||||  ||||||||||||||||| ||||||| |  ||| |||| ||||||| ||||||    
T  6510264 ttaaacaatgattcacgaaatgaaatttttagatgtattcatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttg 6510165  T
Q  209 cactcatgcttaatagttattctctcactctctcaatacctt 250  Q
     | | |||||||||||| ||||| | |||||| |||| ||||    
T  6510164 tagtgatgcttaatagtgattctgttactctcccaatgcctt 6510123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 404
Target Start/End: Complemental strand, 47710737 - 47710682
Alignment:
Q  349 aaccaggcttcaaatactgatccataccctcgataaatttcattcataaggttgat 404  Q
    ||||| ||||||| |||||| |||||||||||||| ||||||||||||||| ||||    
T  47710737 aaccatgcttcaattactgacccataccctcgatagatttcattcataagggtgat 47710682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 47679487 - 47679534
Alignment:
Q  127 aatgaaataatgagatgcatccatattgccttactttgtgttcaagaa 174  Q
    ||||||| |||||||||||||||| |||  ||||||||||||||||||    
T  47679487 aatgaaaaaatgagatgcatccatgttggattactttgtgttcaagaa 47679534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 47691146 - 47691193
Alignment:
Q  127 aatgaaataatgagatgcatccatattgccttactttgtgttcaagaa 174  Q
    ||||||| |||||||||||||||| |||  ||||||||||||||||||    
T  47691146 aatgaaacaatgagatgcatccatgttggattactttgtgttcaagaa 47691193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 206
Target Start/End: Complemental strand, 6497278 - 6497181
Alignment:
Q  109 ttaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgt 206  Q
    |||||||||  ||||  |||||||||  ||||||| || |||||||  ||||||||||||||||| ||||||| |  ||| |||| ||||||| ||||    
T  6497278 ttaaacaatgattcacgaaatgaaatgttgagatgtatacatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggctactgt 6497181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 397
Target Start/End: Complemental strand, 47743224 - 47743167
Alignment:
Q  340 gaatcgattaaccaggcttcaaatactgatccataccctcgataaatttcattcataa 397  Q
    ||||| || ||||| ||||||| || ||| |||||||||||||| |||||||||||||    
T  47743224 gaatcaataaaccatgcttcaattagtgacccataccctcgatagatttcattcataa 47743167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 9e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 92 - 286
Target Start/End: Complemental strand, 27368073 - 27367879
Alignment:
Q  92 atatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagacc 191  Q
    |||| |||||| || ||||||| || ||||||  |||||||||  ||||||||||||| ||||  ||||| ||  ||||||||||  |  |||| |||||    
T  27368073 atattatagatccatcattaaaaaacatttcacaaaatgaaatcttgagatgcatccacattggtttactctgcattcaagaaaacttgattgatagacc 27367974  T
Q  192 aaccatggctgctgttgcactcatgcttaatagttattctctcactctctcaataccttcaaaacctgcctatttttatggaagtggaactagaa 286  Q
    |||||||||| |||||||| ||||||||||||||||||||||  |||||||||||||||| |||||||| ||||||   ||||||||||||||||    
T  27367973 aaccatggcttctgttgcagtcatgcttaatagttattctcttgctctctcaataccttcgaaacctgcgtattttataggaagtggaactagaa 27367879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 126 - 273
Target Start/End: Complemental strand, 28826911 - 28826762
Alignment:
Q  126 aaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgttgcactcatgct---taat 222  Q
    ||||||||| ||||||||||| ||||||| |||||| ||||| ||||| ||||||| | |  |||||||||||||| |  |||||||||||||   ||      
T  28826911 aaatgaaatcatgagatgcattcatattggcttactatgtgtccaagacaatgtagctaaacgaccaaccatggctaccattgcactcatgctaagtagc 28826812  T
Q  223 agttattctctcactctctcaataccttcaaaacctgcctatttttatgga 273  Q
    || ||||||||||||||| |||||||| || ||||||| | ||||||||||    
T  28826811 agctattctctcactctcccaatacctgcagaacctgcat-tttttatgga 28826762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 290
Target Start/End: Complemental strand, 28859377 - 28859213
Alignment:
Q  126 aaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgttgcactcatgcttaatagt 225  Q
    ||||||||| ||||||||||| |||||||  |||||||| || ||||| || |||  |   |||||||||||||||    ||| ||||||||| | |||     
T  28859377 aaatgaaatcatgagatgcattcatattggtttactttgcgtccaagacaacgtaactagaagaccaaccatggctaacattgtactcatgctaagtagc 28859278  T
Q  226 tattctctcactctctcaataccttcaaaacctgcctatttttatgga-agtggaactagaagcct 290  Q
    ||||||||| | ||||| ||||||||| ||||||| | |||||||||| ||| |||||||||||||    
T  28859277 tattctctcgccctctctataccttcagaacctgcat-tttttatggatagtagaactagaagcct 28859213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 273
Target Start/End: Complemental strand, 28843863 - 28843717
Alignment:
Q  126 aaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgttgcactcatgcttaatagt 225  Q
    ||||||||| ||||||||||| |||||||  ||||||||||| ||||| ||||||| |   |||| |||||||||| |  ||| |||  || | | |||     
T  28843863 aaatgaaatcatgagatgcattcatattgggttactttgtgtgcaagacaatgtagctagaagacgaaccatggctaccattgtacttctgataagtagc 28843764  T
Q  226 tattctctcactctctcaataccttcaaaacctgcctatttttatgga 273  Q
     |||||||||||||| | ||||||||| ||||||| | ||||||||||    
T  28843763 aattctctcactctccctataccttcagaacctgcat-tttttatgga 28843717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 90 - 231
Target Start/End: Original strand, 11225575 - 11225716
Alignment:
Q  90 aaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacaga 189  Q
    |||||| |||||| || |||||| ||||  ||||  ||||||||||||||||||||| || ||||| ||||| ||||||||||||||| | ||||| |||    
T  11225575 aaatataatagatccatcattaagcaatggttcacgaaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgaaaga 11225674  T
Q  190 ccaaccatggctgctgttgcactcatgcttaatagttattct 231  Q
    |||| ||||||  | |||| | ||||||||| ||||||||||    
T  11225675 ccaatcatggcaaccgttgtagtcatgcttagtagttattct 11225716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 397
Target Start/End: Original strand, 11225804 - 11225861
Alignment:
Q  340 gaatcgattaaccaggcttcaaatactgatccataccctcgataaatttcattcataa 397  Q
    ||||| || ||||| ||||||| || ||| |||||||||||||| |||||||||||||    
T  11225804 gaatcaataaaccatgcttcaattagtgacccataccctcgatagatttcattcataa 11225861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 107 - 250
Target Start/End: Complemental strand, 4290 - 4147
Alignment:
Q  107 cattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgt 206  Q
    |||||||||||  ||||  |||||||||| | ||||| ||||||||||  ||||||||||||||||| ||||||| |  ||| |||| ||||||| ||||    
T  4290 cattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgt 4191  T
Q  207 tgcactcatgcttaatagttattctctcactctctcaatacctt 250  Q
    || | | |||||||||||| ||||| | |||||| |||| ||||    
T  4190 tgtagtgatgcttaatagtgattctgttactctcccaatgcctt 4147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 107 - 250
Target Start/End: Complemental strand, 11946 - 11803
Alignment:
Q  107 cattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgt 206  Q
    |||||||||||  ||||  |||||||||| | ||||| ||||||||||  ||||||||||||||||| ||||||| |  ||| |||| ||||||| ||||    
T  11946 cattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgt 11847  T
Q  207 tgcactcatgcttaatagttattctctcactctctcaatacctt 250  Q
    || | | |||||||||||| ||||| | |||||| |||| ||||    
T  11846 tgtagtgatgcttaatagtgattctgttactctcccaatgcctt 11803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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