View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_27 (Length: 423)
Name: NF17209_low_27
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 191 - 406
Target Start/End: Complemental strand, 46582629 - 46582414
Alignment:
| Q |
191 |
cttcaagtaacacaaagaaactaaatcaagtgttaggtggagagttctgagaagattgttcttcttgtctagtttcttgctgagtattgataggtgttgc |
290 |
Q |
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| T |
46582629 |
cttcaagtagcacaaagaaactaaatcaagtgttaggtggagagttctgagaagattgttcttcttgtctagtttcttgctgagtattgataggtgttgc |
46582530 |
T |
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| Q |
291 |
aggaagtgaagtggtgctagtttcatttaccctcataggtattgaatggttaattctgccatcaatacaagtagaacattttttctctgcccagctttct |
390 |
Q |
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| T |
46582529 |
aggaagtgaagtggtgctagtttcatttactctcataggtattgaatggttaattctgccatcaatacaagtagaacattttttctctgcccagctttct |
46582430 |
T |
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| Q |
391 |
atatcatattggccat |
406 |
Q |
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| T |
46582429 |
atatcatattggccat |
46582414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 46582736 - 46582700
Alignment:
| Q |
137 |
agatgaattcattgaatgtaactatatgaatcagtgc |
173 |
Q |
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| T |
46582736 |
agatgaattcattgaatgtaactatatgaatcagtgc |
46582700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 46582892 - 46582849
Alignment:
| Q |
1 |
agactttgatgataacttcataacttaaggatgattcaattagattagg |
49 |
Q |
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| T |
46582892 |
agactttgatgataacttcataa-----ggatgattcaattagattagg |
46582849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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