View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_29 (Length: 415)
Name: NF17209_low_29
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_29 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Complemental strand, 37896662 - 37896265
Alignment:
| Q |
18 |
gaagagtatgtaaaagcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatgatcatgaagttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37896662 |
gaagagtatgtaaaagcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatgatcatgaagttc |
37896563 |
T |
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| Q |
118 |
aagcgccacaattgttatctaaatttgttgtaatttgtggtttcatttggtctagtttggttaaaacaagatatagaaatgaaaatgataatgatgatga |
217 |
Q |
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| T |
37896562 |
aagcgccacaattgttatctaaatttgttgtaacttgtggtttcatttggtctagtttggttaaaacaagatatagaaatgaaaatgataatgatgatga |
37896463 |
T |
|
| Q |
218 |
tgaaaaagaagagtattttcgttttgcaggtgattgtagagatagacttgggtacaaaataccagaggggtattttggaaattgtttaacattatgtcat |
317 |
Q |
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| T |
37896462 |
tgaaaaagaagagtattttcgttttgcaggtgattgtagagatagacttgggtacaaaataccagaggggtattttggaaattgtttaacattatgtcat |
37896363 |
T |
|
| Q |
318 |
gcaactgtgaagagaaaggttatgaagggggaagatggttttgtgaatggtgttaaagtaattgaaagggcaataagtgaaatgaaaaatgaaccttt |
415 |
Q |
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| T |
37896362 |
gcaactgtgaagagaaaggttatgaagggggaagatggttttgtgaatggtgttaaagaaattgaaagggcaataagtgaaatgaaaaatgaaccttt |
37896265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 37958540 - 37958937
Alignment:
| Q |
18 |
gaagagtatgtaaaagcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatgatcatgaagttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
37958540 |
gaagagtatgtaaaagcaactattgtttttgcaaaagaagaaattgagagaatgaaaatatgggcacttgatcaatggaagaaaaatgattgtgaagttc |
37958639 |
T |
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| Q |
118 |
aagcgccacaattgttatctaaatttgttgtaatttgtggtttcatttggtctagtttggttaaaacaagatatagaaatgaaaatgataatgatgatga |
217 |
Q |
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||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||| |||||| ||||||||||| |||||||| |
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| T |
37958640 |
aagcgccacaatttttatctaaatttgttgtaacttgtggtttcatttgggctagtatggttaaaacaagatgtagaaaggaaaatgataacgatgatga |
37958739 |
T |
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| Q |
218 |
tgaaaaagaagagtattttcgttttgcaggtgattgtagagatagacttgggtacaaaataccagaggggtattttggaaattgtttaacattatgtcat |
317 |
Q |
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| T |
37958740 |
tgaaaaagaggagtattttggttttccaggtgattgtagagaaagacttgggtacaaaataccagaggggtattttgggaattgtctaacattatgtcat |
37958839 |
T |
|
| Q |
318 |
gcaactgtgaagagaaaggttatgaagggggaagatggttttgtgaatggtgttaaagtaattgaaagggcaataagtgaaatgaaaaatgaaccttt |
415 |
Q |
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| T |
37958840 |
gcaactatgaagagaaaggatatgaagggggaagatggttatgtgaatgctgttaaggtaattgaaagggtaataagtgaaatgaaaaatgaaccttt |
37958937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 15 - 413
Target Start/End: Original strand, 37952799 - 37953191
Alignment:
| Q |
15 |
gatgaagagtatgtaaaagcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatgatcatgaag |
114 |
Q |
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|||||||| | ||| || |||| ||||||||| | |||||| ||||| ||| | ||||||| ||||| | | ||| ||||||||||||| ||||| ||| |
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| T |
37952799 |
gatgaagattgtgttaaggcaattattgttttcggaaaagaagaaatcgaggggatgaaaaaatgggtattgaatgaatggaagaaaaaagatcaagaaa |
37952898 |
T |
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| Q |
115 |
ttcaagcgccacaattgttatctaaatttgttgtaatttgtggtttcatttggtctagtttggttaaaacaagatatagaaatgaaaatgataatgatga |
214 |
Q |
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| T |
37952899 |
tccaagcaccacaatttctatctaaatatgttgtaacttgtgcttttgtttgggttagtttggttaaagcaatgcatagaagt---aatcataat-at-- |
37952992 |
T |
|
| Q |
215 |
tgatgaaaaagaagagtattttcgttttgcaggtgattgtagagatagacttgggtacaaaataccagaggggtattttggaaattgtttaacattatgt |
314 |
Q |
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|||||||||||| ||||||||| |||| |||||||||| ||||| ||||| ||||||| |||||| ||||||||||| ||||| |||||| | || | |
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| T |
37952993 |
tgatgaaaaagacgagtatttttgtttcacaggtgattgcagagacagactagggtacacaataccggaggggtatttcggaaactgtttagcgtttaat |
37953092 |
T |
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| Q |
315 |
catgcaactgtgaagagaaaggttatgaagggggaagatggttttgtgaatggtgttaaagtaattgaaagggcaataagtgaaatgaaaaatgaacct |
413 |
Q |
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| T |
37953093 |
catgcaacgatgaagagaagagatgtgaaaggagaagatggttttgtgaatgctgttaaggtaattgagaaggcaataactgagatgaaaaatgaacct |
37953191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 28166359 - 28166284
Alignment:
| Q |
30 |
aaagcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatg |
105 |
Q |
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||||||| ||||||||||| |||||| ||||||||| | ||||||| || | ||| ||||||||||||||||||| |
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| T |
28166359 |
aaagcaattattgtttttggaaaagaagaaattgaggggatgaaaaaatatgtactgaatcaatggaagaaaaatg |
28166284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 38 - 295
Target Start/End: Complemental strand, 39712434 - 39712171
Alignment:
| Q |
38 |
tattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatgatcat---gaagttcaagcgccacaattgtta |
134 |
Q |
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||||| ||||| |||||| ||||||||| | ||||||| ||||| || ||||||||||||||||||||| || ||| | | | |||| |||| || |
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| T |
39712434 |
tattgcttttggaaaagaagaaattgaggggatgaaaaaatgggtgctgaatcaatggaagaaaaatgataataatgaaatcaacgtgccaaaatttata |
39712335 |
T |
|
| Q |
135 |
tctaaatttgttgtaatttgtggtttcatttggtctagtttggttaaaacaagatatagaaatgaaaatgata---atgatgatgatgaaaaagaagagt |
231 |
Q |
| |
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|||||||||||||||| || || ||| ||||| ||||| ||||| || ||| ||| |||||| ||| | ||||||||||||||||||| |||| |
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| T |
39712334 |
tctaaatttgttgtaacttctgcttttgtttgggctagtatggttgaagcaatgcataaaaatgatgatggtggtgatgatgatgatgaaaaagatgagt |
39712235 |
T |
|
| Q |
232 |
attttcgttttgcaggtgattgtagagatagacttgggtacaaaataccagaggggtattttgg |
295 |
Q |
| |
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| ||| |||| || ||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
39712234 |
acttttgtttcacatgtgattgcagagatagacttgggtactcaataccagaggggtattttgg |
39712171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 305
Target Start/End: Complemental strand, 11528050 - 11527783
Alignment:
| Q |
33 |
gcaactattgtttttgcaaaagaggaaattgagagaatgaaaa---tatgggcacttaatcaatggaagaaaaatgatcatgaagttcaagcgccacaat |
129 |
Q |
| |
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|||| ||||||||||| |||||| ||||||||||| ||||||| |||| || | ||||||||||||||||||||| | ||| | | |||||||||| |
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| T |
11528050 |
gcaattattgtttttggaaaagaagaaattgagaggatgaaaaaaatatgtgc--tgaatcaatggaagaaaaatgataacgaaatcaacgcgccacaat |
11527953 |
T |
|
| Q |
130 |
tgttatctaaatttgttgtaatttgtggtttcatttggtctagtttggttaaaacaagatatagaaatgaaaatgataatgatgatgatgaaaaagaaga |
229 |
Q |
| |
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| |||||||||||||||||| ||||| |||| ||||| ||||| | |||||||| | |||| ||| ||| |||||| || || ||||| || |
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| T |
11527952 |
ttctatctaaatttgttgtaacttgtgctttcgtttgggctagtataactaaaacaatacatag------aaacgatgatgatggcgacgataaagatga |
11527859 |
T |
|
| Q |
230 |
gtattttcgttttgcaggtgattgtagagatagacttgggtacaaaataccagaggggtattttggaaattgttta |
305 |
Q |
| |
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|||||| ||| || ||||||| |||||||||||||| || ||||||||||||||||||||| || |||||| |
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| T |
11527858 |
atatttttctttcacatgtgattgcagagatagacttggttatccaataccagaggggtattttgggaactgttta |
11527783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 38757354 - 38757265
Alignment:
| Q |
16 |
atgaagagtatgtaaaagcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatg |
105 |
Q |
| |
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||||||| | ||| ||| ||| ||||||||||| |||||| ||||||||| | ||||||| || ||||| ||||||||||||||||||| |
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| T |
38757354 |
atgaagattttgttaaaacaattattgtttttgaaaaagaagaaattgaggggatgaaaaaatatgcactgaatcaatggaagaaaaatg |
38757265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 40768324 - 40768235
Alignment:
| Q |
16 |
atgaagagtatgtaaaagcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatg |
105 |
Q |
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| T |
40768324 |
atgaagattttgttaaggcaattattgtttttggaaaagaagaaattgaggggatgaaaaaatatgtactgaatcaatggaagaaaaatg |
40768235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 11149359 - 11149448
Alignment:
| Q |
16 |
atgaagagtatgtaaaagcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatg |
105 |
Q |
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||||||| | ||| || |||| ||||||||||| |||||| ||||||||| | ||||||| || | || ||||||||||||||||||| |
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| T |
11149359 |
atgaagattttgttaaggcaattattgtttttggaaaagaagaaattgaggggatgaaaaaatatgtgctgaatcaatggaagaaaaatg |
11149448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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