View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_39 (Length: 336)
Name: NF17209_low_39
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 6855228 - 6855057
Alignment:
| Q |
1 |
agatcaaagttacctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctggtggtgctgttcgagaaagagtcattcgagctttcttgg |
100 |
Q |
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| T |
6855228 |
agatcaaagttacctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctggtggtgctgttcgagaaagagtcattcgagctttcttgg |
6855129 |
T |
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| Q |
101 |
ttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagctttgaagggat |
172 |
Q |
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| T |
6855128 |
ttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagctttgaagggat |
6855057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 39 - 274
Target Start/End: Original strand, 6823024 - 6823258
Alignment:
| Q |
39 |
tgcatatggtggtgttttatctggtggtgctgttcgagaaagagtcattcgagctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatc |
138 |
Q |
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| T |
6823024 |
tgcatattgtagtattttatgtggaggcgctgttagagaaagaatcattcgagctttcttggttgaagagaaaaagatagtcaagaatgttctgaagatc |
6823123 |
T |
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| Q |
139 |
caaaagacaaaggaaaaacaagctttgaagggatgaattttatgaaaggagatacatatctttttggaggagttttaggtttgagtga-tatagtacaag |
237 |
Q |
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| T |
6823124 |
cgaaagagaaaggaaaaacaagctttgaagggatgaattttatgaaaggag--acatatcttttcagaggaattttaggtttgagtgattatagtacaag |
6823221 |
T |
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| Q |
238 |
cacaaaattcattagagttgtttcctttgttaatttt |
274 |
Q |
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| T |
6823222 |
cacaaaatttattagagttgttccctttgtgaatttt |
6823258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 91 - 259
Target Start/End: Original strand, 24245690 - 24245859
Alignment:
| Q |
91 |
gctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagctttgaagggatgaattttatgaaaggaga |
190 |
Q |
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||||||||||||||| |||||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||||| | | ||| || ||| |||| |
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| T |
24245690 |
gctttcttggttgaagagcaaaagatcgtcaagaaagtcttgaagatccaaaagacaaaggaaaagcaagctttgaagggttaagtttcattaaacgaga |
24245789 |
T |
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| Q |
191 |
tacatatctttttggaggagttttaggtttgagtga-tatagtacaagcacaaaattcattagagttgtt |
259 |
Q |
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| T |
24245790 |
taaagatctttttggaggagttttaggtttgagtgattatagtaaaagcacaaaatttattagagctgtt |
24245859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 225 - 315
Target Start/End: Complemental strand, 6855059 - 6854969
Alignment:
| Q |
225 |
gatatagtacaagcacaaaattcattagagttgtttcctttgttaattttgtataaataagggaagaaaatgatagagagaaccatctttg |
315 |
Q |
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| T |
6855059 |
gatatagtacaagcacaaaattcattagagttgtttcctttgttaattttgtataaataagggaagaaaatgatagagagaaccatctttg |
6854969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 2418914 - 2418844
Alignment:
| Q |
91 |
gctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagc |
161 |
Q |
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| T |
2418914 |
gctttccttgttgaagagcaaaaaatagttaagaaagttttgaagatccagaaaacaaaagaaaagcaagc |
2418844 |
T |
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