View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_42 (Length: 316)
Name: NF17209_low_42
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 34 - 291
Target Start/End: Complemental strand, 227896 - 227639
Alignment:
| Q |
34 |
ttcatgcatcatggtaatattttgaggaaagtaattttcacgatactgattttgtgaaaaatggtttcgtgacattgaggcatacgtcatatagtatgca |
133 |
Q |
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| T |
227896 |
ttcatgcatcatggtaatattttgaggaaagtaattttcacgatactgattttgtgaaaaatggtttcatgacattgaggcatacgtcatatagtatgca |
227797 |
T |
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| Q |
134 |
tggttgattgtcaaatgcggcgttgttattttcctaatcacatctgtcaatttaaatgaaaattatttatccaaatggaatgatatatctggatcattgt |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
227796 |
tggttgattgtcaaatgcggcgttgttattttcctaatcacatctgtcaatttaaatgaaaattatttatccaaatgggatgatatatctggatcattgt |
227697 |
T |
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| Q |
234 |
cgagtctcacgtgtcatgcatattgagcataatttcatgttttcttgataaaaacttc |
291 |
Q |
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| T |
227696 |
cgagtctcacgtgtcatgcatattgagcataatttcatgttttcttgataaaaacttc |
227639 |
T |
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