View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_44 (Length: 312)
Name: NF17209_low_44
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_44 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 6855520 - 6855219
Alignment:
| Q |
11 |
ttattcttccttatttttagtgatgatatttctctgtggataaatagannnnnnngaactttgcaaattgcgcttcgtggcctgaaaaataagatattgt |
110 |
Q |
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| T |
6855520 |
ttattcttccttatttttagtgatgatatttctctgtggataaatagatttttttgaactttgcaaattgcgcttcgtggcctgaaaaataatatattgt |
6855421 |
T |
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| Q |
111 |
taatgcttgttttcatgttggtgggaataagtatggtggaaatgtagttatatacagtccgggttgtcaaaacccttgatgggaagcttgtttaccgaca |
210 |
Q |
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| T |
6855420 |
taatgcttgttttcatgttggtgggaataagtatggtggaaatgtagttatatacagtccgggttgtcaaaaccctcgatgggaagcttgtttaccgaca |
6855321 |
T |
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| Q |
211 |
actaggaagagagctagtggaccaaaatgcattgttaatggaaagagggttcataaggggggattccatgtttaaggcccacagagtacaagagatcaaa |
310 |
Q |
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| T |
6855320 |
actaggaagagagctagtggaccaaaatgcattgttaatggaaagagggttcataaggggggattccatgtttaaggcccacagagtacaagagatcaaa |
6855221 |
T |
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| Q |
311 |
gt |
312 |
Q |
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| T |
6855220 |
gt |
6855219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 24242462 - 24242532
Alignment:
| Q |
194 |
aagcttgtttacc-gacaactaggaagagagctagtggaccaaaatgcattgttaatggaaagagggttca |
263 |
Q |
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| T |
24242462 |
aagcttgtttatcagacaaccaagaagagagctagtggacctaaatgccctgttactggaaagaggattca |
24242532 |
T |
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