View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17209_low_45 (Length: 306)

Name: NF17209_low_45
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17209_low_45
NF17209_low_45
[»] chr4 (24 HSPs)
chr4 (117-246)||(15723927-15724056)
chr4 (117-228)||(45983437-45983548)
chr4 (117-243)||(23120165-23120291)
chr4 (249-297)||(15723685-15723733)
chr4 (186-235)||(32223296-32223345)
chr4 (186-241)||(29636824-29636879)
chr4 (186-241)||(50570935-50570990)
chr4 (200-241)||(29644116-29644157)
chr4 (20-52)||(15724121-15724153)
chr4 (20-52)||(23120068-23120100)
chr4 (123-159)||(35233209-35233245)
chr4 (20-52)||(45983613-45983645)
chr4 (186-229)||(18319548-18319591)
chr4 (186-229)||(18399090-18399133)
chr4 (188-235)||(29335098-29335145)
chr4 (186-241)||(42557775-42557830)
chr4 (125-159)||(17794281-17794315)
chr4 (117-159)||(42198910-42198952)
chr4 (200-241)||(6333362-6333403)
chr4 (200-241)||(10218729-10218770)
chr4 (186-235)||(21069102-21069151)
chr4 (117-158)||(49640969-49641010)
chr4 (20-52)||(7784364-7784396)
chr4 (193-233)||(40900072-40900112)
[»] chr8 (15 HSPs)
chr8 (193-246)||(31497583-31497636)
chr8 (186-241)||(3006549-3006604)
chr8 (186-241)||(5803223-5803278)
chr8 (186-240)||(15272283-15272337)
chr8 (186-240)||(15452652-15452706)
chr8 (117-159)||(31497516-31497558)
chr8 (200-241)||(14549274-14549315)
chr8 (186-235)||(30254103-30254152)
chr8 (186-230)||(9012819-9012863)
chr8 (20-52)||(40436666-40436698)
chr8 (192-235)||(24682074-24682117)
chr8 (193-235)||(4785292-4785334)
chr8 (118-159)||(19539519-19539560)
chr8 (193-225)||(7428427-7428459)
chr8 (186-230)||(40436493-40436537)
[»] chr3 (16 HSPs)
chr3 (186-244)||(4554733-4554791)
chr3 (186-228)||(38651976-38652018)
chr3 (186-241)||(10369262-10369317)
chr3 (186-241)||(33361004-33361059)
chr3 (117-159)||(38651907-38651949)
chr3 (193-246)||(8557942-8557995)
chr3 (186-246)||(20846517-20846576)
chr3 (186-241)||(4669624-4669679)
chr3 (117-159)||(4554817-4554859)
chr3 (186-232)||(17144707-17144753)
chr3 (117-159)||(45629316-45629358)
chr3 (186-231)||(5695593-5695638)
chr3 (186-246)||(2832371-2832431)
chr3 (20-52)||(38651809-38651841)
chr3 (123-159)||(44651086-44651122)
chr3 (187-227)||(50578986-50579026)
[»] chr5 (17 HSPs)
chr5 (188-246)||(6595023-6595081)
chr5 (186-246)||(27572022-27572082)
chr5 (186-241)||(11917456-11917511)
chr5 (186-241)||(15068511-15068566)
chr5 (117-159)||(691471-691513)
chr5 (117-159)||(6595109-6595151)
chr5 (186-238)||(8409044-8409096)
chr5 (20-52)||(11402826-11402858)
chr5 (186-241)||(701271-701326)
chr5 (187-222)||(6718650-6718685)
chr5 (192-231)||(22747556-22747595)
chr5 (20-49)||(691377-691406)
chr5 (190-227)||(691545-691582)
chr5 (189-246)||(4414273-4414330)
chr5 (117-158)||(40884447-40884488)
chr5 (198-235)||(41454920-41454957)
chr5 (19-51)||(14652688-14652720)
[»] chr1 (22 HSPs)
chr1 (186-246)||(35992583-35992643)
chr1 (192-240)||(36203426-36203474)
chr1 (186-230)||(17651813-17651857)
chr1 (186-241)||(8211329-8211384)
chr1 (186-241)||(20493799-20493854)
chr1 (193-235)||(8165535-8165577)
chr1 (186-238)||(5155310-5155362)
chr1 (188-232)||(9962131-9962175)
chr1 (186-246)||(12973605-12973665)
chr1 (186-246)||(26345035-26345095)
chr1 (20-52)||(32910192-32910224)
chr1 (186-246)||(35375221-35375281)
chr1 (186-237)||(40095398-40095449)
chr1 (117-159)||(6694286-6694328)
chr1 (117-159)||(19051234-19051276)
chr1 (192-238)||(24630001-24630047)
chr1 (117-159)||(26344966-26345008)
chr1 (117-159)||(32910282-32910324)
chr1 (188-225)||(10847516-10847553)
chr1 (186-226)||(8268701-8268741)
chr1 (20-52)||(11073192-11073224)
chr1 (192-232)||(18310054-18310094)
[»] chr7 (14 HSPs)
chr7 (193-246)||(6880090-6880143)
chr7 (186-241)||(47069719-47069774)
chr7 (200-241)||(10671871-10671912)
chr7 (186-235)||(11399175-11399224)
chr7 (198-235)||(48642836-48642873)
chr7 (20-52)||(37375556-37375588)
chr7 (186-246)||(40848896-40848956)
chr7 (20-52)||(48643016-48643048)
chr7 (186-241)||(3213199-3213254)
chr7 (190-235)||(23032730-23032775)
chr7 (20-52)||(8118103-8118135)
chr7 (186-246)||(16535720-16535780)
chr7 (186-246)||(16629882-16629942)
chr7 (186-246)||(30079569-30079629)
[»] chr6 (12 HSPs)
chr6 (186-241)||(5874129-5874184)
chr6 (186-246)||(892317-892378)
chr6 (200-241)||(13801973-13802014)
chr6 (200-241)||(13810860-13810901)
chr6 (186-246)||(32190647-32190707)
chr6 (205-241)||(33550370-33550406)
chr6 (20-51)||(20500790-20500821)
chr6 (117-159)||(8064617-8064659)
chr6 (189-235)||(19135092-19135138)
chr6 (117-159)||(29048247-29048289)
chr6 (186-235)||(28632991-28633040)
chr6 (186-246)||(7170074-7170134)
[»] chr2 (11 HSPs)
chr2 (186-241)||(16578686-16578741)
chr2 (186-241)||(36413617-36413672)
chr2 (186-228)||(15320566-15320608)
chr2 (199-233)||(20985896-20985930)
chr2 (187-237)||(30514958-30515008)
chr2 (186-232)||(30761738-30761784)
chr2 (117-158)||(30761666-30761707)
chr2 (123-159)||(6946470-6946506)
chr2 (20-52)||(11051229-11051261)
chr2 (186-246)||(21734577-21734637)
chr2 (187-235)||(30759626-30759674)
[»] scaffold0664 (1 HSPs)
scaffold0664 (193-235)||(6052-6094)


Alignment Details
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 246
Target Start/End: Complemental strand, 15724056 - 15723927
Alignment:
Q  117 atgttatgttttaactttttaacctgattttaatgttggaaacnnnnnnntttatcatttnnnnnnnnnccgcatcaaccaatccaacccaaaccgcatt 216  Q
    ||||| ||||||| || ||||||||||||||||||||||||||       |||||| | |         ||||||||||| |||||||||||||||||||    
T  15724056 atgttgtgttttacctctttaacctgattttaatgttggaaacaaaaaaatttatcgtcttgaaaaaaaccgcatcaaccgatccaacccaaaccgcatt 15723957  T
Q  217 agtttggtttggtttggtttggatgttatt 246  Q
    ||||||||||||||||||||||||||||||    
T  15723956 agtttggtttggtttggtttggatgttatt 15723927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 117 - 228
Target Start/End: Complemental strand, 45983548 - 45983437
Alignment:
Q  117 atgttatgttttaactttttaacctgattttaatgttggaaacnnnnnnntttatcatttnnnnnnnnnccgcatcaaccaatccaacccaaaccgcatt 216  Q
    ||||| |||||||||||||||||||||||||||||||||||||        |||||||||         ||||||||||| |||||||||||||||||||    
T  45983548 atgttgtgttttaactttttaacctgattttaatgttggaaacaaaaaaaattatcatttcgaaaaaacccgcatcaaccgatccaacccaaaccgcatt 45983449  T
Q  217 agtttggtttgg 228  Q
    ||||||||||||    
T  45983448 agtttggtttgg 45983437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 243
Target Start/End: Original strand, 23120165 - 23120291
Alignment:
Q  117 atgttatgttttaactttttaacctgattttaatgttggaaacnnnnnnntttatcatttnnnnnnnnnccgcatcaaccaatccaacccaaaccgcatt 216  Q
    ||||| |||||||||||||||||||||||||||||||||||||       |||||| | |         | |||| |||| |||||||||||||| ||||    
T  23120165 atgttgtgttttaactttttaacctgattttaatgttggaaacaaaaaaatttatcgtctagaaaaaaactgcatgaacctatccaacccaaaccacatt 23120264  T
Q  217 agtttggtttggtttggtttggatgtt 243  Q
    |||||||||||||||||||||||||||    
T  23120265 agtttggtttggtttggtttggatgtt 23120291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 15723733 - 15723685
Alignment:
Q  249 taggatattttcaactcaattatcctttattctaaattattacctttga 297  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15723733 taggatattttcaactccattatcctttattctaaattattacctttga 15723685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 32223296 - 32223345
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtt 235  Q
    ||||||||||| ||| ||||||||||||||| ||||||||||||||||||    
T  32223296 ccgcatcaaccgatctaacccaaaccgcatttgtttggtttggtttggtt 32223345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 29636879 - 29636824
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    ||||||||||  | |||| |||||||||||| ||||||||||||||||||||||||    
T  29636879 ccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtttggatg 29636824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 50570935 - 50570990
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    ||||||||||  | |||| |||||||||||| ||||||||||||||||||||||||    
T  50570935 ccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtttggatg 50570990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 29644116 - 29644157
Alignment:
Q  200 ccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    |||| |||||||||||| ||||||||||||||||||||||||    
T  29644116 ccaatccaaaccgcattggtttggtttggtttggtttggatg 29644157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 15724153 - 15724121
Alignment:
Q  20 ttgtccatgtttttaacttggtctatgttgttg 52  Q
    |||||||||||||||||||||||||||||||||    
T  15724153 ttgtccatgtttttaacttggtctatgttgttg 15724121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 23120068 - 23120100
Alignment:
Q  20 ttgtccatgtttttaacttggtctatgttgttg 52  Q
    |||||||||||||||||||||||||||||||||    
T  23120068 ttgtccatgtttttaacttggtctatgttgttg 23120100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 35233209 - 35233245
Alignment:
Q  123 tgttttaactttttaacctgattttaatgttggaaac 159  Q
    |||||||||||||||||||||||||||||||| ||||    
T  35233209 tgttttaactttttaacctgattttaatgttgaaaac 35233245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 45983645 - 45983613
Alignment:
Q  20 ttgtccatgtttttaacttggtctatgttgttg 52  Q
    |||||||||||||||||||||||||||||||||    
T  45983645 ttgtccatgtttttaacttggtctatgttgttg 45983613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 18319548 - 18319591
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggt 229  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||||    
T  18319548 ccgcaccaaccgatccaacccaaaccgcattggtttggtttggt 18319591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 18399133 - 18399090
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggt 229  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||||    
T  18399133 ccgcaccaaccgatccaacccaaaccgcattggtttggtttggt 18399090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 29335098 - 29335145
Alignment:
Q  188 gcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtt 235  Q
    |||||| |||||||||| ||||||| ||| ||||||||||||||||||    
T  29335098 gcatcatccaatccaactcaaaccgtattggtttggtttggtttggtt 29335145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 42557830 - 42557775
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    ||||||||||  | |||| |||||||||||| |||||||||| |||||||||||||    
T  42557830 ccgcatcaactgaaccaatccaaaccgcattggtttggtttgatttggtttggatg 42557775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 159
Target Start/End: Complemental strand, 17794315 - 17794281
Alignment:
Q  125 ttttaactttttaacctgattttaatgttggaaac 159  Q
    ||||||||||||||| |||||||||||||||||||    
T  17794315 ttttaactttttaacttgattttaatgttggaaac 17794281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 42198952 - 42198910
Alignment:
Q  117 atgttatgttttaactttttaacctgattttaatgttggaaac 159  Q
    ||||| ||||||||||||||||| |||||||||||||| ||||    
T  42198952 atgttgtgttttaactttttaacatgattttaatgttgaaaac 42198910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 6333403 - 6333362
Alignment:
Q  200 ccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    |||| |||||||||||| ||||||||||||||| ||||||||    
T  6333403 ccaatccaaaccgcattggtttggtttggtttgatttggatg 6333362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 10218770 - 10218729
Alignment:
Q  200 ccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    |||| |||||||||||| |||||||||||||| |||||||||    
T  10218770 ccaatccaaaccgcattggtttggtttggttttgtttggatg 10218729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 21069151 - 21069102
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtt 235  Q
    ||||| |||||||||||| |||||||||||| |||||  |||||||||||    
T  21069151 ccgcaccaaccaatccaatccaaaccgcattggtttgagttggtttggtt 21069102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 49641010 - 49640969
Alignment:
Q  117 atgttatgttttaactttttaacctgattttaatgttggaaa 158  Q
    ||||| |||||||||| |||||| ||||||||||||||||||    
T  49641010 atgttgtgttttaactctttaacttgattttaatgttggaaa 49640969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 7784364 - 7784396
Alignment:
Q  20 ttgtccatgtttttaacttggtctatgttgttg 52  Q
    |||||||||||||||| ||||||||||||||||    
T  7784364 ttgtccatgtttttaatttggtctatgttgttg 7784396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 40900072 - 40900112
Alignment:
Q  193 aaccaatccaacccaaaccgcattagtttggtttggtttgg 233  Q
    |||||| |||| |||||||||||| ||||||||||||||||    
T  40900072 aaccaaaccaatccaaaccgcattggtttggtttggtttgg 40900112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 31497583 - 31497636
Alignment:
Q  193 aaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgttatt 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31497583 aaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgttatt 31497636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 3006549 - 3006604
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    ||||||||||  | |||| |||||||||||| ||||||||||||||||||||||||    
T  3006549 ccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtttggatg 3006604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 5803223 - 5803278
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    ||||||||||  | |||| |||||||||||| ||||||||||||||||||||||||    
T  5803223 ccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtttggatg 5803278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 15272283 - 15272337
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggat 240  Q
    ||||| ||||| ||||||||||||| ||||| |||||||||||||||||| ||||    
T  15272283 ccgcaccaaccgatccaacccaaactgcatttgtttggtttggtttggttcggat 15272337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 15452652 - 15452706
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggat 240  Q
    ||||| ||||| ||||||||||||| ||||| |||||||||||||||||| ||||    
T  15452652 ccgcaccaaccgatccaacccaaactgcatttgtttggtttggtttggttcggat 15452706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 31497516 - 31497558
Alignment:
Q  117 atgttatgttttaactttttaacctgattttaatgttggaaac 159  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  31497516 atgttgtgttttaacttattaacctgattttaatgttggaaac 31497558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 14549315 - 14549274
Alignment:
Q  200 ccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    |||| |||||||||||| ||||||||||||||||||||||||    
T  14549315 ccaatccaaaccgcattggtttggtttggtttggtttggatg 14549274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 30254103 - 30254152
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtt 235  Q
    ||||||||||| ||||||  |||||||||||||||| |||||||||||||    
T  30254103 ccgcatcaaccgatccaattcaaaccgcattagttttgtttggtttggtt 30254152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 9012819 - 9012863
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtt 230  Q
    ||||| ||||| ||||||||||||||||||| |||||||||||||    
T  9012819 ccgcaccaaccgatccaacccaaaccgcattggtttggtttggtt 9012863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 40436698 - 40436666
Alignment:
Q  20 ttgtccatgtttttaacttggtctatgttgttg 52  Q
    |||||||||||||||||||||||||||||||||    
T  40436698 ttgtccatgtttttaacttggtctatgttgttg 40436666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 24682074 - 24682117
Alignment:
Q  192 caaccaatccaacccaaaccgcattagtttggtttggtttggtt 235  Q
    ||||||||| || |||||| ||||||||||||||||||||||||    
T  24682074 caaccaatctaatccaaactgcattagtttggtttggtttggtt 24682117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 4785334 - 4785292
Alignment:
Q  193 aaccaatccaacccaaaccgcattagtttggtttggtttggtt 235  Q
    |||||||||||  ||||||||||| ||||||||||||||||||    
T  4785334 aaccaatccaattcaaaccgcattggtttggtttggtttggtt 4785292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 19539560 - 19539519
Alignment:
Q  118 tgttatgttttaactttttaacctgattttaatgttggaaac 159  Q
    |||| ||||||||||||||||| |||| ||||||||||||||    
T  19539560 tgttgtgttttaactttttaacttgatattaatgttggaaac 19539519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 7428427 - 7428459
Alignment:
Q  193 aaccaatccaacccaaaccgcattagtttggtt 225  Q
    ||||||||||| |||||||||||||||||||||    
T  7428427 aaccaatccaatccaaaccgcattagtttggtt 7428459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 40436537 - 40436493
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtt 230  Q
    ||||| ||||| ||||||||||||||||||| |||||||| ||||    
T  40436537 ccgcaccaaccgatccaacccaaaccgcattggtttggttcggtt 40436493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 4554791 - 4554733
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgtta 244  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  4554791 ccgcatcaaccgatccaactcaaaccgcattagtttggtttggtttggtttggatgtta 4554733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 38651976 - 38652018
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttgg 228  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  38651976 ccgcatcaaccgatccaacccaaaccgcattagtttggtttgg 38652018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 10369317 - 10369262
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    ||||||||||  | |||| |||||||||||| ||||||||||||||||||||||||    
T  10369317 ccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtttggatg 10369262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 33361059 - 33361004
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    ||||||||||  | |||| |||||||||||| ||||||||||||||||||||||||    
T  33361059 ccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtttggatg 33361004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 38651907 - 38651949
Alignment:
Q  117 atgttatgttttaactttttaacctgattttaatgttggaaac 159  Q
    ||||| ||||||||||||||||||||||||||| |||||||||    
T  38651907 atgttgtgttttaactttttaacctgattttaacgttggaaac 38651949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 8557942 - 8557995
Alignment:
Q  193 aaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgttatt 246  Q
    |||| |||| |||||||||||||| |||||||||||||||||| |||| |||||    
T  8557942 aaccgatccgacccaaaccgcattggtttggtttggtttggttcggattttatt 8557995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 20846576 - 20846517
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgttatt 246  Q
    ||||| ||||| ||||||||||||||||||| ||||| ||||| ||||||||||| |||||    
T  20846576 ccgcaccaaccgatccaacccaaaccgcattggtttgatttgg-ttggtttggattttatt 20846517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 4669624 - 4669679
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    ||||||||||  | |||| |||||||||||| |||||||||||||||||| |||||    
T  4669624 ccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggttcggatg 4669679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 4554859 - 4554817
Alignment:
Q  117 atgttatgttttaactttttaacctgattttaatgttggaaac 159  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||    
T  4554859 atgttgtgttttaactttttaacctaattttaatgttgcaaac 4554817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 17144707 - 17144753
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttg 232  Q
    ||||||||||| |||||||||||||| |||| |||||| ||||||||    
T  17144707 ccgcatcaaccgatccaacccaaaccacattggtttggcttggtttg 17144753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 45629358 - 45629316
Alignment:
Q  117 atgttatgttttaactttttaacctgattttaatgttggaaac 159  Q
    ||||||||||||| ||||||||  |||||||||||||||||||    
T  45629358 atgttatgttttacctttttaatttgattttaatgttggaaac 45629316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 5695638 - 5695593
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggttt 231  Q
    ||||| ||||| |||||||||||| ||| |||||||||||||||||    
T  5695638 ccgcaacaaccgatccaacccaaatcgctttagtttggtttggttt 5695593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 2832371 - 2832431
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgttatt 246  Q
    ||||| ||||| ||| ||||||||||||||| ||||| ||||||||| || |||| |||||    
T  2832371 ccgcaccaaccgatcaaacccaaaccgcattggtttgatttggtttgattcggattttatt 2832431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 38651809 - 38651841
Alignment:
Q  20 ttgtccatgtttttaacttggtctatgttgttg 52  Q
    ||||||||||| |||||||||||||||||||||    
T  38651809 ttgtccatgttgttaacttggtctatgttgttg 38651841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 44651122 - 44651086
Alignment:
Q  123 tgttttaactttttaacctgattttaatgttggaaac 159  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  44651122 tgtttcaactttttaacttgattttaatgttggaaac 44651086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 50578986 - 50579026
Alignment:
Q  187 cgcatcaaccaatccaacccaaaccgcattagtttggtttg 227  Q
    |||| |||||||||||||||||||| |||| ||||||||||    
T  50578986 cgcaccaaccaatccaacccaaaccacattggtttggtttg 50579026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 6595081 - 6595023
Alignment:
Q  188 gcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgttatt 246  Q
    ||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||    
T  6595081 gcatcaaccgatccaacccaaaccacattagtttggtttggtttgatttggatgttatt 6595023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 27572022 - 27572082
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgttatt 246  Q
    ||||| ||||| ||||||||||||||||||| |||||||||||||||||| |||| |||||    
T  27572022 ccgcaccaaccgatccaacccaaaccgcattggtttggtttggtttggttcggattttatt 27572082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 11917511 - 11917456
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    ||||||||||  | |||| |||||||||||| ||||||||||||||||||||||||    
T  11917511 ccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtttggatg 11917456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 15068566 - 15068511
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    ||||||||||  | |||| |||||||||||| ||||||||||||||||||||||||    
T  15068566 ccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtttggatg 15068511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 691471 - 691513
Alignment:
Q  117 atgttatgttttaactttttaacctgattttaatgttggaaac 159  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  691471 atgttgtgttttaactttttaacttgattttaatgttggaaac 691513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 6595151 - 6595109
Alignment:
Q  117 atgttatgttttaactttttaacctgattttaatgttggaaac 159  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  6595151 atgttgtgttttaactttttaatctgattttaatgttggaaac 6595109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 8409096 - 8409044
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttgg 238  Q
    ||||||||||  | |||| |||||||||||| |||||||||||||||||||||    
T  8409096 ccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtttgg 8409044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 11402858 - 11402826
Alignment:
Q  20 ttgtccatgtttttaacttggtctatgttgttg 52  Q
    |||||||||||||||||||||||||||||||||    
T  11402858 ttgtccatgtttttaacttggtctatgttgttg 11402826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 701326 - 701271
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    ||||||||||  | |||| ||||||||||||  |||||||||||||||||||||||    
T  701326 ccgcatcaactgaaccaatccaaaccgcattgatttggtttggtttggtttggatg 701271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 6718685 - 6718650
Alignment:
Q  187 cgcatcaaccaatccaacccaaaccgcattagtttg 222  Q
    |||||||||||||||||||||||||||||| |||||    
T  6718685 cgcatcaaccaatccaacccaaaccgcattggtttg 6718650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 22747556 - 22747595
Alignment:
Q  192 caaccaatccaacccaaaccgcattagtttggtttggttt 231  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  22747556 caaccgatccaacccaaactgcattagtttggtttggttt 22747595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 691377 - 691406
Alignment:
Q  20 ttgtccatgtttttaacttggtctatgttg 49  Q
    ||||||||||||||||||||||||||||||    
T  691377 ttgtccatgtttttaacttggtctatgttg 691406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 691545 - 691582
Alignment:
Q  190 atcaaccaatccaacccaaaccgcattagtttggtttg 227  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  691545 atcaaccgatccaacccaaagcgcattagtttggtttg 691582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 4414330 - 4414273
Alignment:
Q  189 catcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgttatt 246  Q
    |||||||  |||||| ||||| ||||||||||||||||||||| |||| ||| |||||    
T  4414330 catcaactgatccaaaccaaatcgcattagtttggtttggttttgtttagattttatt 4414273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 40884488 - 40884447
Alignment:
Q  117 atgttatgttttaactttttaacctgattttaatgttggaaa 158  Q
    ||||||||||||| ||||||||  ||||||||||||||||||    
T  40884488 atgttatgttttagctttttaatttgattttaatgttggaaa 40884447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 41454957 - 41454920
Alignment:
Q  198 atccaacccaaaccgcattagtttggtttggtttggtt 235  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  41454957 atccaatccaaaccgcattggtttggtttggtttggtt 41454920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 14652720 - 14652688
Alignment:
Q  19 attgtccatgtttttaacttggtctatgttgtt 51  Q
    ||||||||||||||||| |||||||||||||||    
T  14652720 attgtccatgtttttaagttggtctatgttgtt 14652688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 35992583 - 35992643
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgttatt 246  Q
    ||||| ||||| |||||| ||||||||||||||||||||||||||||| |||||| |||||    
T  35992583 ccgcaccaaccgatccaaaccaaaccgcattagtttggtttggtttggattggattttatt 35992643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 36203426 - 36203474
Alignment:
Q  192 caaccaatccaacccaaaccgcattagtttggtttggtttggtttggat 240  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  36203426 caaccaatccaacccaaaccgcattagtttggtttggttcggttcggat 36203474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 17651857 - 17651813
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtt 230  Q
    |||||||||||||||||| |||||||||||| |||||||||||||    
T  17651857 ccgcatcaaccaatccaaaccaaaccgcattggtttggtttggtt 17651813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 8211384 - 8211329
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    ||||||||||  | |||| |||||||||||| ||||||||||||||||||||||||    
T  8211384 ccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtttggatg 8211329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 20493854 - 20493799
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    ||||||||||  | |||| |||||||||||| ||||||||||||||||||||||||    
T  20493854 ccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtttggatg 20493799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 8165535 - 8165577
Alignment:
Q  193 aaccaatccaacccaaaccgcattagtttggtttggtttggtt 235  Q
    |||| ||||||||||||||||||| ||||||||||||||||||    
T  8165535 aaccgatccaacccaaaccgcatttgtttggtttggtttggtt 8165577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 5155310 - 5155362
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttgg 238  Q
    ||||||||||  | |||| |||||||||||| |||||||||||||||||||||    
T  5155310 ccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtttgg 5155362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 9962131 - 9962175
Alignment:
Q  188 gcatcaaccaatccaacccaaaccgcattagtttggtttggtttg 232  Q
    ||||||||| |||||||||||||| |||| |||||||||||||||    
T  9962131 gcatcaaccgatccaacccaaaccacattggtttggtttggtttg 9962175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 12973665 - 12973605
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgttatt 246  Q
    ||||| ||||| |||||| ||||||| |||||||||||||||||||| || |||| |||||    
T  12973665 ccgcaccaaccgatccaatccaaaccacattagtttggtttggtttgattcggattttatt 12973605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 26345035 - 26345095
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgttatt 246  Q
    ||||| ||||| |||||| |||||||||||| ||||||||| |||||||| |||| |||||    
T  26345035 ccgcaccaaccgatccaatccaaaccgcattggtttggttttgtttggttcggattttatt 26345095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 32910192 - 32910224
Alignment:
Q  20 ttgtccatgtttttaacttggtctatgttgttg 52  Q
    |||||||||||||||||||||||||||||||||    
T  32910192 ttgtccatgtttttaacttggtctatgttgttg 32910224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 35375281 - 35375221
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgttatt 246  Q
    ||||||||||  |||||| |||||||| ||||||||||||| |||||||| |||| |||||    
T  35375281 ccgcatcaactgatccaaaccaaaccggattagtttggttttgtttggttcggattttatt 35375221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 40095398 - 40095449
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttg 237  Q
    ||||| ||||| |||||| ||||||| |||| ||||||||||||||||||||    
T  40095398 ccgcaccaaccgatccaatccaaaccacattggtttggtttggtttggtttg 40095449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 6694286 - 6694328
Alignment:
Q  117 atgttatgttttaactttttaacctgattttaatgttggaaac 159  Q
    ||||| ||||||||||||||||  |||||||||||||||||||    
T  6694286 atgttgtgttttaactttttaatttgattttaatgttggaaac 6694328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 19051276 - 19051234
Alignment:
Q  117 atgttatgttttaactttttaacctgattttaatgttggaaac 159  Q
    ||||| ||||||||||||||||| |||||||||||||| ||||    
T  19051276 atgttgtgttttaactttttaacttgattttaatgttgaaaac 19051234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 24630047 - 24630001
Alignment:
Q  192 caaccaatccaacccaaaccgcattagtttggtttggtttggtttgg 238  Q
    |||||||||||||||||||| ||||  |||| |||||||||||||||    
T  24630047 caaccaatccaacccaaaccacattgatttgatttggtttggtttgg 24630001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 26344966 - 26345008
Alignment:
Q  117 atgttatgttttaactttttaacctgattttaatgttggaaac 159  Q
    ||||| ||||||||||||||||  |||||||||||||||||||    
T  26344966 atgttgtgttttaactttttaatttgattttaatgttggaaac 26345008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 32910282 - 32910324
Alignment:
Q  117 atgttatgttttaactttttaacctgattttaatgttggaaac 159  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||    
T  32910282 atgttgtgtttaaactttttaacttgattttaatgttggaaac 32910324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 10847516 - 10847553
Alignment:
Q  188 gcatcaaccaatccaacccaaaccgcattagtttggtt 225  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  10847516 gcatcaaccaatccaacccaaaccacattggtttggtt 10847553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 8268741 - 8268701
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggttt 226  Q
    ||||| ||||| ||||||||||||||| |||||||||||||    
T  8268741 ccgcaccaaccgatccaacccaaaccgtattagtttggttt 8268701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 11073192 - 11073224
Alignment:
Q  20 ttgtccatgtttttaacttggtctatgttgttg 52  Q
    ||||||||||||| |||||||||||||||||||    
T  11073192 ttgtccatgttttgaacttggtctatgttgttg 11073224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 18310094 - 18310054
Alignment:
Q  192 caaccaatccaacccaaaccgcattagtttggtttggtttg 232  Q
    ||||| |||||| |||||||||||| |||||||||||||||    
T  18310094 caaccgatccaaaccaaaccgcatttgtttggtttggtttg 18310054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 6880090 - 6880143
Alignment:
Q  193 aaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgttatt 246  Q
    |||| ||||||||||||||||||| |||| |||||||||||||||||| |||||    
T  6880090 aaccgatccaacccaaaccgcatttgttttgtttggtttggtttggattttatt 6880143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 47069774 - 47069719
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    ||||||||||  | |||| |||||||||||| ||||||||||||||||||||||||    
T  47069774 ccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtttggatg 47069719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 10671912 - 10671871
Alignment:
Q  200 ccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    |||| |||||||||||| ||||||||||||||||||||||||    
T  10671912 ccaatccaaaccgcattggtttggtttggtttggtttggatg 10671871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 11399224 - 11399175
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtt 235  Q
    ||||| ||||| ||||||||||||||||||| ||||||||| ||||||||    
T  11399224 ccgcaccaaccgatccaacccaaaccgcatttgtttggtttagtttggtt 11399175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 48642873 - 48642836
Alignment:
Q  198 atccaacccaaaccgcattagtttggtttggtttggtt 235  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  48642873 atccaacccaaaccgcattggtttggtttggtttggtt 48642836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 37375588 - 37375556
Alignment:
Q  20 ttgtccatgtttttaacttggtctatgttgttg 52  Q
    |||||||||||||||||||||||||||||||||    
T  37375588 ttgtccatgtttttaacttggtctatgttgttg 37375556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 40848956 - 40848896
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgttatt 246  Q
    ||||| ||||| || ||||||||||||||||||||||||||  ||||||| |||| |||||    
T  40848956 ccgcaccaaccgattcaacccaaaccgcattagtttggttttatttggttcggattttatt 40848896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 48643048 - 48643016
Alignment:
Q  20 ttgtccatgtttttaacttggtctatgttgttg 52  Q
    |||||||||||||||||||||||||||||||||    
T  48643048 ttgtccatgtttttaacttggtctatgttgttg 48643016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 3213199 - 3213254
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    ||||||||||  | |||| |||||||||||| ||||||||||||||| ||||||||    
T  3213199 ccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttgatttggatg 3213254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 23032775 - 23032730
Alignment:
Q  190 atcaaccaatccaacccaaaccgcattagtttggtttggtttggtt 235  Q
    ||||||| |||||| ||||||| |||| ||||||||||||||||||    
T  23032775 atcaaccgatccaatccaaacctcattggtttggtttggtttggtt 23032730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 8118103 - 8118135
Alignment:
Q  20 ttgtccatgtttttaacttggtctatgttgttg 52  Q
    |||| ||||||||||||||||||||||||||||    
T  8118103 ttgttcatgtttttaacttggtctatgttgttg 8118135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 16535720 - 16535780
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgttatt 246  Q
    ||||||| ||||||||||  |||||| ||||||||| | ||||||||||| |||| |||||    
T  16535720 ccgcatccaccaatccaaatcaaaccacattagtttagattggtttggttcggattttatt 16535780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 16629942 - 16629882
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgttatt 246  Q
    ||||||| ||||||||||  |||||| ||||||||| | ||||||||||| |||| |||||    
T  16629942 ccgcatccaccaatccaaatcaaaccacattagtttagattggtttggttcggattttatt 16629882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 30079569 - 30079629
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgttatt 246  Q
    ||||| ||||| ||||||||||||||||||| ||||| ||| |||| |||| ||| |||||    
T  30079569 ccgcaccaaccgatccaacccaaaccgcattggtttgatttagtttcgtttagattttatt 30079629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 5874129 - 5874184
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    ||||||||||  | |||| |||||||||||| ||||||||||||||||||||||||    
T  5874129 ccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtttggatg 5874184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 892317 - 892378
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattag-tttggtttggtttggtttggatgttatt 246  Q
    |||||||||||||||||||||||||| |||| | ||| ||||||||| ||| ||||||||||    
T  892317 ccgcatcaaccaatccaacccaaaccacattggtttttgtttggtttagttcggatgttatt 892378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 13801973 - 13802014
Alignment:
Q  200 ccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    |||| |||||||||||| ||||||||||||||||||||||||    
T  13801973 ccaatccaaaccgcattggtttggtttggtttggtttggatg 13802014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 13810860 - 13810901
Alignment:
Q  200 ccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    |||| |||||||||||| ||||||||||||||||||||||||    
T  13810860 ccaatccaaaccgcattggtttggtttggtttggtttggatg 13810901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 32190647 - 32190707
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgttatt 246  Q
    ||||| ||||| ||||||| ||||| ||||| |||||||||||||| |||||||| |||||    
T  32190647 ccgcaccaaccgatccaactcaaactgcatttgtttggtttggtttagtttggattttatt 32190707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 33550406 - 33550370
Alignment:
Q  205 ccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    |||||||||||| ||||||||||||||||||||||||    
T  33550406 ccaaaccgcattggtttggtttggtttggtttggatg 33550370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 20500821 - 20500790
Alignment:
Q  20 ttgtccatgtttttaacttggtctatgttgtt 51  Q
    ||||||||||||||||||||||||||||||||    
T  20500821 ttgtccatgtttttaacttggtctatgttgtt 20500790  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 8064659 - 8064617
Alignment:
Q  117 atgttatgttttaactttttaacctgattttaatgttggaaac 159  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||    
T  8064659 atgttgtgttttagctttttaacttgattttaatgttggaaac 8064617  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 19135092 - 19135138
Alignment:
Q  189 catcaaccaatccaacccaaaccgcattagtttggtttggtttggtt 235  Q
    |||||||| |||||| ||||| |||||||||||| ||||||||||||    
T  19135092 catcaaccgatccaatccaaatcgcattagtttgatttggtttggtt 19135138  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 29048289 - 29048247
Alignment:
Q  117 atgttatgttttaactttttaacctgattttaatgttggaaac 159  Q
    ||||| ||||||||||||||||  |||||||||||||||||||    
T  29048289 atgttgtgttttaactttttaatttgattttaatgttggaaac 29048247  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 28633040 - 28632991
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtt 235  Q
    ||||||||||| |||||||| ||||||||||  ||||||| |||||||||    
T  28633040 ccgcatcaaccgatccaaccaaaaccgcattgatttggttcggtttggtt 28632991  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 7170074 - 7170134
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgttatt 246  Q
    ||||| ||||| |||||| ||||||| |||| ||||| |||||||||||||| || |||||    
T  7170074 ccgcaccaaccgatccaatccaaaccacattggtttgatttggtttggtttgaattttatt 7170134  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 16578741 - 16578686
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    ||||||||||  | |||| |||||||||||| ||||||||||||||||||||||||    
T  16578741 ccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtttggatg 16578686  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 36413617 - 36413672
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatg 241  Q
    ||||||||||  | |||| |||||||||||| ||||||||||||||||||||||||    
T  36413617 ccgcatcaactgaaccaatccaaaccgcattggtttggtttggtttggtttggatg 36413672  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 15320566 - 15320608
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttgg 228  Q
    ||||||||||||||||||  |||||| ||||||||||||||||    
T  15320566 ccgcatcaaccaatccaaaacaaaccacattagtttggtttgg 15320608  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 20985896 - 20985930
Alignment:
Q  199 tccaacccaaaccgcattagtttggtttggtttgg 233  Q
    ||||| |||||||||||||||||||||||||||||    
T  20985896 tccaatccaaaccgcattagtttggtttggtttgg 20985930  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 30514958 - 30515008
Alignment:
Q  187 cgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttg 237  Q
    |||| ||||| ||| ||||||||||| ||| ||||||||||||||||||||    
T  30514958 cgcaacaaccgatcaaacccaaaccgtattggtttggtttggtttggtttg 30515008  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 30761738 - 30761784
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttg 232  Q
    ||||||||||| ||| |||||||| |||||| |||||||||||||||    
T  30761738 ccgcatcaaccgatctaacccaaatcgcattggtttggtttggtttg 30761784  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 30761666 - 30761707
Alignment:
Q  117 atgttatgttttaactttttaacctgattttaatgttggaaa 158  Q
    |||||||||| ||||||||||||  |||||||||||||||||    
T  30761666 atgttatgttataactttttaactcgattttaatgttggaaa 30761707  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 6946470 - 6946506
Alignment:
Q  123 tgttttaactttttaacctgattttaatgttggaaac 159  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  6946470 tgttttacctttttaacttgattttaatgttggaaac 6946506  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 11051229 - 11051261
Alignment:
Q  20 ttgtccatgtttttaacttggtctatgttgttg 52  Q
    ||||||||||||| |||||||||||||||||||    
T  11051229 ttgtccatgttttcaacttggtctatgttgttg 11051261  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 21734577 - 21734637
Alignment:
Q  186 ccgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgttatt 246  Q
    ||||||||||| |||||||| ||||| |||| || |||||||||||| ||| ||| |||||    
T  21734577 ccgcatcaaccgatccaacctaaacctcattggtatggtttggtttgatttagattttatt 21734637  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 30759626 - 30759674
Alignment:
Q  187 cgcatcaaccaatccaacccaaaccgcattagtttggtttggtttggtt 235  Q
    |||| ||||| ||| ||| ||||||||||| ||||||||||||||||||    
T  30759626 cgcaccaaccgatctaacacaaaccgcattggtttggtttggtttggtt 30759674  T

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Target: scaffold0664 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 6094 - 6052
Alignment:
Q  193 aaccaatccaacccaaaccgcattagtttggtttggtttggtt 235  Q
    |||| ||||||||||||||||||| ||||||||||||||||||    
T  6094 aaccgatccaacccaaaccgcattggtttggtttggtttggtt 6052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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