View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_46 (Length: 298)
Name: NF17209_low_46
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 44866998 - 44866724
Alignment:
| Q |
18 |
ccttgtccagtgcattagctatcatatagctacatcttctatggtccttgaaactgccaaatcaacaacccag-atattacttgtcttgtgtgtaaaaaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44866998 |
ccttgtccagtgcattagctatcatatagctacatcttctatggtccttgaaactgccaaatcaacaacccagtatattacttgtcttgtgtgtaaaaaa |
44866899 |
T |
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| Q |
117 |
tataagaaaattcagaaaacgtgttattttttaactattcactcggcattcattaagagagcggagagacaaaattaaatcttccaccaagcagccaagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44866898 |
tataagaaaattcagaaaacgtgttattttttaactattcactcggcattcattaagagagcagagagacaaaattaaatcttccaccaagcagccaagt |
44866799 |
T |
|
| Q |
217 |
gacactcactcctcaaatagaactttgatacgagcttcctgatcttcattgaaagcactgactctttttcttttc |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44866798 |
gacactcactcctcaaatagaactttgatacgagcttcctgatcttcattgaaagcactgactctttttcttttc |
44866724 |
T |
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