View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17209_low_50 (Length: 289)
Name: NF17209_low_50
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 33 - 275
Target Start/End: Complemental strand, 7529849 - 7529607
Alignment:
| Q |
33 |
tcatctttttcaaaatcattgccatcaccaacagtgtcttccttccaattcaatgtcaatcgatcaagatgtggcttccctattaaattcatatgcttag |
132 |
Q |
| |
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||||||||||| || |||||| ||||||||||| ||||||||||||||||||||| ||| | ||||||||||| ||||||| ||||||||||| |||||| |
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| T |
7529849 |
tcatctttttctaactcattggcatcaccaacattgtcttccttccaattcaatgccaaccaatcaagatgtgacttccctcttaaattcataggcttag |
7529750 |
T |
|
| Q |
133 |
cttctgttggacaatgcctcaaatgttccaagccagttatctcgagtcgtcccctcaaattatgtaatcctcctaactcactagctttagcactatcttt |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||| ||||||||||||||| |
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| T |
7529749 |
cttctgttggacaatgcctcaaatgttccaagccagttatctcgagtagtcccctcaagttatgtaatcctcctagctcactagttttagcactatcttt |
7529650 |
T |
|
| Q |
233 |
agaagttgtatttaacacaaacggtgtcagtgtttgaagatta |
275 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||| |
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|
| T |
7529649 |
agaagttgtatctaacacaaactgtgtcagtgtttgaagatta |
7529607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 30 - 275
Target Start/End: Complemental strand, 7496129 - 7495884
Alignment:
| Q |
30 |
atatcatctttttcaaaatcattgccatcaccaacagtgtcttccttccaattcaatgtcaatcgatcaagatgtggcttccctattaaattcatatgct |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| | |
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| T |
7496129 |
atatcatctttttcaaaatcattgccatcaccaacagtgtcttccttccaattcaatgtcaatcgatgaagatgtgacttccctattaaattcatatgtt |
7496030 |
T |
|
| Q |
130 |
tagcttctgttggacaatgcctcaaatgttccaagccagttatctcgagtcgtcccctcaaattatgtaatcctcctaactcactagctttagcactatc |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||| |||| ||||||| ||||||||| || |
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|
| T |
7496029 |
tagcttctgttggacaatgcctcaaatgttccaagccttttatcacgagtcgtcccctcaagttatgtaatccccctagttcactagttttagcactgtc |
7495930 |
T |
|
| Q |
230 |
tttagaagttgtatttaacacaaacggtgtcagtgtttgaagatta |
275 |
Q |
| |
|
|||||||||||||| ||||||||| |||||| | ||||||||||| |
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|
| T |
7495929 |
tttagaagttgtatctaacacaaagtgtgtcaatctttgaagatta |
7495884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 33 - 275
Target Start/End: Complemental strand, 7483727 - 7483485
Alignment:
| Q |
33 |
tcatctttttcaaaatcattgccatcaccaacagtgtcttccttccaattcaatgtcaatcgatcaagatgtggcttccctattaaattcatatgcttag |
132 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||| || ||||| |||||| ||||||||| |||||||| |||||||||||||||||||||||||| |
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|
| T |
7483727 |
tcatccttttcaaactcattgccatcaccaacagtgtgttgtttccacttcaatctcaatcgatgaagatgtgacttccctattaaattcatatgcttag |
7483628 |
T |
|
| Q |
133 |
cttctgttggacaatgcctcaaatgttccaagccagttatctcgagtcgtcccctcaaattatgtaatcctcctaactcactagctttagcactatcttt |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
7483627 |
cttctgttggacaatgcctcaaatgttccaagccagttatctcgagtagtcccctcaagttatgtaatcctcctagctcactagttttagcactatcttt |
7483528 |
T |
|
| Q |
233 |
agaagttgtatttaacacaaacggtgtcagtgtttgaagatta |
275 |
Q |
| |
|
|||||| |||| ||||||||| |||| ||||||||||||||| |
|
|
| T |
7483527 |
agaagtcgtatctaacacaaattgtgtaagtgtttgaagatta |
7483485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 30 - 275
Target Start/End: Complemental strand, 7521787 - 7521542
Alignment:
| Q |
30 |
atatcatctttttcaaaatcattgccatcaccaacagtgtcttccttccaattcaatgtcaatcgatcaagatgtggcttccctattaaattcatatgct |
129 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| | ||| ||||| ||||||| || | ||||||||||| ||||||||||||||||||||||| |
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|
| T |
7521787 |
atatcatctttttcaaactcattgccatcaccaacagtctgttcattccatttcaatgataaccaatcaagatgtgacttccctattaaattcatatgct |
7521688 |
T |
|
| Q |
130 |
tagcttctgttggacaatgcctcaaatgttccaagccagttatctcgagtcgtcccctcaaattatgtaatcctcctaactcactagctttagcactatc |
229 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| || |
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|
| T |
7521687 |
tagcttctgttggacaaggcctcagatgttccaagccttttatctcgagtcgtcccctcaaattatgtaatcctcctagctcactagttttagcactgtc |
7521588 |
T |
|
| Q |
230 |
tttagaagttgtatttaacacaaacggtgtcagtgtttgaagatta |
275 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||| |
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|
| T |
7521587 |
tttagaagttgtatctaacacaaagtgtgtcagtgtttgaagatta |
7521542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 30 - 275
Target Start/End: Original strand, 7127405 - 7127650
Alignment:
| Q |
30 |
atatcatctttttcaaaatcattgccatcaccaacagtgtcttccttccaattcaatgtcaatcgatcaagatgtggcttccctattaaattcatatgct |
129 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||||||||| || |||||||||||||||||||||| |||||||| ||||||||||||||||||||| | |
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|
| T |
7127405 |
atatcatccttttcaaactcattctcatcaccaacagtgtgttgtttccaattcaatgtcaatcgatgaagatgtgacttccctattaaattcatatgtt |
7127504 |
T |
|
| Q |
130 |
tagcttctgttggacaatgcctcaaatgttccaagccagttatctcgagtcgtcccctcaaattatgtaatcctcctaactcactagctttagcactatc |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||| |||| ||||||| ||||||||| || |
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|
| T |
7127505 |
tagcttctgttggacaatgcctcaaatgttccaagccttttatcacgagtcgtcccctcaagttatgtaatccccctagttcactagttttagcactgtc |
7127604 |
T |
|
| Q |
230 |
tttagaagttgtatttaacacaaacggtgtcagtgtttgaagatta |
275 |
Q |
| |
|
|||||||||||||| ||||||||| |||||| ||||||||||||| |
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|
| T |
7127605 |
tttagaagttgtatctaacacaaagtgtgtcaatgtttgaagatta |
7127650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 30 - 275
Target Start/End: Original strand, 7720680 - 7720925
Alignment:
| Q |
30 |
atatcatctttttcaaaatcattgccatcaccaacagtgtcttccttccaattcaatgtcaatcgatcaagatgtggcttccctattaaattcatatgct |
129 |
Q |
| |
|
||||||||||||||||| |||||| |||||| |||| ||| || ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
7720680 |
atatcatctttttcaaactcattgtcatcactaacaatgtgttgtttccaattcaatgtcaatcgacgaagatgtgacttccctattaaattcatatgct |
7720779 |
T |
|
| Q |
130 |
tagcttctgttggacaatgcctcaaatgttccaagccagttatctcgagtcgtcccctcaaattatgtaatcctcctaactcactagctttagcactatc |
229 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||| | ||||| | || |
|
|
| T |
7720780 |
tagcttctgttggacaatgcctcagatgttccaagccatttatctcgagttgtcccctcaaattatttaatcctcctagctcacttgttttagatttgtc |
7720879 |
T |
|
| Q |
230 |
tttagaagttgtatttaacacaaacggtgtcagtgtttgaagatta |
275 |
Q |
| |
|
| ||||||| |||| |||||||||| |||||||||||||||||||| |
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|
| T |
7720880 |
tctagaagtcgtatctaacacaaactgtgtcagtgtttgaagatta |
7720925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 30 - 271
Target Start/End: Original strand, 7716850 - 7717091
Alignment:
| Q |
30 |
atatcatctttttcaaaatcattgccatcaccaacagtgtcttccttccaattcaatgtcaatcgatcaagatgtggcttccctattaaattcatatgct |
129 |
Q |
| |
|
|||||||||||||| || ||| || ||||||||||||||| | | |||||||||||||||||| | |||||||| |||||||||||||||||| |||| |
|
|
| T |
7716850 |
atatcatctttttccaagtcactggcatcaccaacagtgtgtacattccaattcaatgtcaattcacgaagatgtgacttccctattaaattcatgtgct |
7716949 |
T |
|
| Q |
130 |
tagcttctgttggacaatgcctcaaatgttccaagccagttatctcgagtcgtcccctcaaattatgtaatcctcctaactcactagctttagcactatc |
229 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |||||||||||||||| ||||||| ||||||||| || |
|
|
| T |
7716950 |
tagcttctgttggacaatgcctcaaattttccaagccatttatcacgagtcgtcccctcaagttatgtaatcctcctagttcactagttttagcactgtc |
7717049 |
T |
|
| Q |
230 |
tttagaagttgtatttaacacaaacggtgtcagtgtttgaag |
271 |
Q |
| |
|
| | || || |||| ||||||||| |||||||||||||||| |
|
|
| T |
7717050 |
tctggaggtcgtatcgaacacaaactgtgtcagtgtttgaag |
7717091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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