View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17209_low_53 (Length: 271)
Name: NF17209_low_53
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_53 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 47256902 - 47256662
Alignment:
| Q |
20 |
gagcgtgtattaacgatgcacatcattcgcacatcttcatctggttctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgt |
119 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47256902 |
gagcgtgcattaacgatgcacatcattcgcacatcttcatctggttctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgt |
47256803 |
T |
|
| Q |
120 |
atgcagtgcactgagaaaggtgaagtggaaccaagcgacgaatcgcagctatgtgagcggatgtgaagaagaaagattgatggactacaatagtagtatc |
219 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47256802 |
atgcagtgcaccgagaaaggtgaagtggaaccaagcgacgaatcgcagctatgtgagcggatgtgaagaagaaagattgatggactacaatagtagtatc |
47256703 |
T |
|
| Q |
220 |
ttcttccttgatgtacgtatttggcggaagtatttgttcat |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47256702 |
ttcttccttgatgtacgtatttggcggaagtatttgttcat |
47256662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 23 - 258
Target Start/End: Complemental strand, 47242775 - 47242536
Alignment:
| Q |
23 |
cgtgtattaacgatgcacatcattcgcacatcttcatctggttctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgtat- |
121 |
Q |
| |
|
|||| ||||||||||||||||||||| || ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
47242775 |
cgtgcattaacgatgcacatcattcgtacctcttcatctggctctatctgcaatgcttttgtgcggcagcaccaataatatgcagtgataagatcaaatt |
47242676 |
T |
|
| Q |
122 |
---gcagtgcactgagaaaggtgaagtggaaccaagcgacgaatcgcagctatgtgagcggatgtgaagaagaaagattgatggactacaatagtagtat |
218 |
Q |
| |
|
| |||||| ||| |||||||| ||||||||||| ||||||| ||||||||||||| | ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47242675 |
aatgtagtgcaatgatgaaggtgaattggaaccaagcaacgaatcacagctatgtgagcaggtgtgaagaagaaagattgatggactacgatagtagtat |
47242576 |
T |
|
| Q |
219 |
cttcttccttgatgtacgtatttggcggaagtatttgttc |
258 |
Q |
| |
|
||||||| |||||||| |||||||||| |||||||||||| |
|
|
| T |
47242575 |
cttcttctttgatgtaggtatttggcgaaagtatttgttc |
47242536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 47283644 - 47283461
Alignment:
| Q |
23 |
cgtgtattaacgatgcacatcattcgcacatcttcatctggttctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgtatg |
122 |
Q |
| |
|
|||| ||||||||||||||||||||| || ||||||||||| |||| ||||||||||||||||||||| |||||| ||||||| ||||||||||| ||| |
|
|
| T |
47283644 |
cgtgcattaacgatgcacatcattcgtacttcttcatctggctctaactgcaatgcttttgtgcggcaacaccaaaaacatgcggtgataagatcaaatg |
47283545 |
T |
|
| Q |
123 |
cagtgcactgagaaaggtgaagtggaaccaagcgacgaatcgcagctatgtgagcggatgtgaagaagaaagattgatggacta |
206 |
Q |
| |
|
| |||| ||| |||||||| ||||| |||| |||| || ||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
47283544 |
tactgcattgacgaaggtgaaatggaatcaagtgacggattgcagctatgtgagaaagtgtaaagaagaaagattgatggacta |
47283461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 47279051 - 47278868
Alignment:
| Q |
23 |
cgtgtattaacgatgcacatcattcgcacatcttcatctggttctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgtatg |
122 |
Q |
| |
|
|||| ||||||||||||||||||||| || ||||||||||| |||| ||||||||||||||| ||||| |||||| ||||||| ||||||||||| ||| |
|
|
| T |
47279051 |
cgtgcattaacgatgcacatcattcgtacttcttcatctggctctaactgcaatgcttttgtacggcaacaccaaaaacatgcggtgataagatcaaatg |
47278952 |
T |
|
| Q |
123 |
cagtgcactgagaaaggtgaagtggaaccaagcgacgaatcgcagctatgtgagcggatgtgaagaagaaagattgatggacta |
206 |
Q |
| |
|
| |||| ||| |||||||| ||||| ||| ||||||||| |||||||| ||| || ||||||||||| |||||||||| |
|
|
| T |
47278951 |
tactgcattgacgaaggtgaaatggaatcaaacgacgaatctcagctatgcgagtaagcgtaaagaagaaagagtgatggacta |
47278868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 47299173 - 47299381
Alignment:
| Q |
20 |
gagcgtgtattaacgatgcacatcattcgcacatcttcatctggttctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgt |
119 |
Q |
| |
|
||||||| ||| |||||||||||||||| || |||||||||| |||| |||||||||||||||||| || |||||| |||||| || |||||||||| |
|
|
| T |
47299173 |
gagcgtgcattggcgatgcacatcattcgtacctcttcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagcgataagatcga |
47299272 |
T |
|
| Q |
120 |
atgcagtgcactgagaaaggtgaagtggaaccaagcgacgaatcgcagctatgtgagcggatgtgaagaagaaagattgatggactacaatagtagtatc |
219 |
Q |
| |
|
||| ||||| ||| |||||||| |||||||||| |||||| | ||||||| || | | | |||||||||||||||||||||| | || |||||| |
|
|
| T |
47299273 |
atgtggtgcattgacgaaggtgaaatggaaccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggactagagaagcagtatc |
47299372 |
T |
|
| Q |
220 |
ttcttcctt |
228 |
Q |
| |
|
|| |||||| |
|
|
| T |
47299373 |
tttttcctt |
47299381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 47292566 - 47292774
Alignment:
| Q |
20 |
gagcgtgtattaacgatgcacatcattcgcacatcttcatctggttctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgt |
119 |
Q |
| |
|
||||||| ||| |||| |||||||||||| || |||| ||| | |||| |||||||||||||||||| || |||||| |||||| || ||||||||| |
|
|
| T |
47292566 |
gagcgtgcattgacgacgcacatcattcgtacctctttatccgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagcgataagatcaa |
47292665 |
T |
|
| Q |
120 |
atgcagtgcactgagaaaggtgaagtggaaccaagcgacgaatcgcagctatgtgagcggatgtgaagaagaaagattgatggactacaatagtagtatc |
219 |
Q |
| |
|
||| ||||| ||| |||||||| |||||||||| |||||| ||||||||||| || | | | |||||||||||| |||| |||| | || |||||| |
|
|
| T |
47292666 |
atgtggtgcattgacgaaggtgaaatggaaccaagagacgaagcgcagctatgtcagaagctctaaagaagaaagatcgatgaactagagaagcagtatc |
47292765 |
T |
|
| Q |
220 |
ttcttcctt |
228 |
Q |
| |
|
||||||||| |
|
|
| T |
47292766 |
ttcttcctt |
47292774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 47267664 - 47267541
Alignment:
| Q |
38 |
cacatcattcgcacatcttcatctggttctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgtatgcagtgcactgagaaa |
137 |
Q |
| |
|
||||||||||| | || ||||||| |||| |||||||||||||||||| || |||||| |||||| ||||||||||||| ||| || || || || |
|
|
| T |
47267664 |
cacatcattcgtatctcgtcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtacaatggcgaa |
47267565 |
T |
|
| Q |
138 |
ggtgaagtggaaccaagcgacgaa |
161 |
Q |
| |
|
|||||| |||||||||| |||||| |
|
|
| T |
47267564 |
ggtgaaatggaaccaagagacgaa |
47267541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 23 - 258
Target Start/End: Complemental strand, 32731442 - 32731207
Alignment:
| Q |
23 |
cgtgtattaacgatgcacatcattcgcacatcttcatctggttctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgtatg |
122 |
Q |
| |
|
|||| ||||||||||||||||||||| || ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
32731442 |
cgtgcattaacgatgcacatcattcgtacctcttcatctggctctatctgcaatgcttttgtgcggcagcaccaataacatgcactgataagatcaaatg |
32731343 |
T |
|
| Q |
123 |
cagtgcactgagaaaggtgaagtggaaccaagcgacgaatcgcagctatgtgagcggatgtgaagaagaaagattgatggactacaatagtagtatcttc |
222 |
Q |
| |
|
|||||| ||| |||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32731342 |
tagtgcaatgatgaaggtgaattggaaccaagcaacgaatcgcagctatgtgagcaggtgtgaagaagaaagattgatggactacgatagtagtatcttc |
32731243 |
T |
|
| Q |
223 |
ttccttgatgtacgtatttggcggaagtatttgttc |
258 |
Q |
| |
|
||| |||||||| |||||||||| |||||||||||| |
|
|
| T |
32731242 |
ttctttgatgtaggtatttggcgaaagtatttgttc |
32731207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University