View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_59 (Length: 254)
Name: NF17209_low_59
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_59 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 6866321 - 6866081
Alignment:
| Q |
14 |
attatactcttggccagataagaaattgtgtaacagcacaagaggcctggaatcagttaaaggccacttttagcgaaaatttaaatgcagaccaagatat |
113 |
Q |
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| T |
6866321 |
attatactcttggccagataagaaattgtgtaacagcacaagaggcctggaatcggttaaaggccgcttttagcgaaaatttaaatgcagaccaagatat |
6866222 |
T |
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| Q |
114 |
tgagcaaggaggtcttcaaactgacattgacaagtttcatgtggcactgaagaaaggcatgtggaatgatgcaattctgtttatcagacaagatggagat |
213 |
Q |
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| T |
6866221 |
tgagcaaggaggtcttcaaactgacattgacaagtttcatgtggcactgaagaaaggcatgtggaatgatgcaattctgtttatcagccaagatggagat |
6866122 |
T |
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| Q |
214 |
attatttctcaaaagtcgtcctctaaaggctggacttctct |
254 |
Q |
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| T |
6866121 |
attatttctcaaaagtcgtcctcgaaaggctggacttctct |
6866081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 6133605 - 6133356
Alignment:
| Q |
14 |
attatactcttggccagataagaaattgtgtaacagcacaagaggcctggaatcagttaaaggccacttttagcgaaaatttaaatgcagaccaa----- |
108 |
Q |
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| T |
6133605 |
attatactcttcgccaaataagaaattgtgtgacagcacaagaggcttggaatcacttaaaagctgtttttagcgaagatttaagagcagacaaatctta |
6133506 |
T |
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| Q |
109 |
----gatattgagcaaggaggtcttcaaactgacattgacaagtttcatgtggcactgaagaaaggcatgtggaatgatgcaattctgtttatcagacaa |
204 |
Q |
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| T |
6133505 |
caatgatattgagcaaggaggtcttcaaagtgatattgacaagtttcatgtagcagtgaagaaaggcatgtggaatgacgcgattttgtttatcaggaat |
6133406 |
T |
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| Q |
205 |
gatggagatattatttctcaaaagtcgtcctctaaaggctggacttctct |
254 |
Q |
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| T |
6133405 |
gacggagatattatttcgcaaaagtcaccctctaatggttggacttctct |
6133356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 109 - 254
Target Start/End: Original strand, 6088169 - 6088314
Alignment:
| Q |
109 |
gatattgagcaaggaggtcttcaaactgacattgacaagtttcatgtggcactgaagaaaggcatgtggaatgatgcaattctgtttatcagacaagatg |
208 |
Q |
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| T |
6088169 |
gatattgagcaaggaggtcttcaaactgacattgacatgtttcatgtggcagtgaagaaaggcatgtggaacgacgcaattttcttcatcagacgtgatg |
6088268 |
T |
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| Q |
209 |
gagatattatttctcaaaagtcgtcctctaaaggctggacttctct |
254 |
Q |
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| T |
6088269 |
gagatattatttcacaaaagtcatcctttaatggttggacttctct |
6088314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 6088041 - 6088101
Alignment:
| Q |
14 |
attatactcttggccagataagaaattgtgtaacagcacaagaggcctggaatcagttaaa |
74 |
Q |
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| T |
6088041 |
attataatcttcgccaaataagaaattgtgtaacagcacaagaggcttggaatcacttaaa |
6088101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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