View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_67 (Length: 239)
Name: NF17209_low_67
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_67 |
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| [»] scaffold0011 (1 HSPs) |
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| [»] scaffold1260 (1 HSPs) |
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| [»] scaffold0387 (1 HSPs) |
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| [»] scaffold0211 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 75 - 224
Target Start/End: Complemental strand, 3597620 - 3597471
Alignment:
| Q |
75 |
cattcagaagcaatataacacatgtatatatattagagagaataagttacttcagaagcacattgaacatatgtaaaaatatcaaatcatacaagaagtt |
174 |
Q |
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| T |
3597620 |
cattcggaagcaatataacacatgtatatatatcagagagaataagttacttcagaagcacattgaacatatgtaaaaatatcaaatcatacaagaagtt |
3597521 |
T |
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| Q |
175 |
cagaagcattcatatgaagagtagtaattcataagtagatgaggtaattt |
224 |
Q |
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| T |
3597520 |
cagaagcattcatatgaagagaagtaattcagaagtagatgaggtaattt |
3597471 |
T |
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Target: scaffold0011 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 134603 - 134544
Alignment:
| Q |
75 |
cattcagaagcaatataacacatgtatatatattagagagaataagttacttcagaagca |
134 |
Q |
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| T |
134603 |
cattcagaagtaatataaaacatgtataaatatcagagtgaataaattacttcagaagca |
134544 |
T |
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Target: scaffold1260 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1260
Description:
Target: scaffold1260; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 2029 - 1972
Alignment:
| Q |
75 |
cattcagaagcaatataacacatgtatatatattagagagaataagttacttcagaag |
132 |
Q |
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| T |
2029 |
cattcagaagcaatataaaacaagtataaatatcagagtgaataaattacttcagaag |
1972 |
T |
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Target: scaffold0387 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0387
Description:
Target: scaffold0387; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 8295 - 8352
Alignment:
| Q |
75 |
cattcagaagcaatataacacatgtatatatattagagagaataagttacttcagaag |
132 |
Q |
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| T |
8295 |
cattcagaagcaatataaaacatgtgtaaatatcagagtgaataaattacttcagaag |
8352 |
T |
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Target: scaffold0211 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 14835 - 14783
Alignment:
| Q |
78 |
tcagaagcaatataacacatgtatatatattagagagaataagttacttcaga |
130 |
Q |
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| T |
14835 |
tcagaagcaatataaaacatgtgtaaatatcatagagaataaattacttcaga |
14783 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 16556034 - 16555998
Alignment:
| Q |
153 |
atatcaaatcatacaagaagttcagaagcattcatat |
189 |
Q |
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| T |
16556034 |
atatcaaagcaaacaagaagttcagaagcattcatat |
16555998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 16609628 - 16609664
Alignment:
| Q |
153 |
atatcaaatcatacaagaagttcagaagcattcatat |
189 |
Q |
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|||||||| || ||||||||||||||||||||||||| |
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| T |
16609628 |
atatcaaagcaaacaagaagttcagaagcattcatat |
16609664 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 30743883 - 30743915
Alignment:
| Q |
75 |
cattcagaagcaatataacacatgtatatatat |
107 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
30743883 |
cattcaggagcaatataacacatgtatatatat |
30743915 |
T |
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