View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_7 (Length: 676)
Name: NF17209_low_7
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 569; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 7 - 658
Target Start/End: Complemental strand, 42770052 - 42769423
Alignment:
| Q |
7 |
tagataatactgataaatttaaatgcaacaggttaatcttgttatatactcgtatttatctaatgagcatctttttgttaaaagtaacacaatgttatgc |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42770052 |
tagataatactgataaatttaaatgcaacaggttaatcttgttatatactcgtatttatctaatgagcatctttttgttaaaagt--------------- |
42769968 |
T |
|
| Q |
107 |
ttctgatacatatatagtttacacataatacctaatttttcactctaactccattattatattatttgttcatgatatataggaagctaattggagcaag |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769967 |
-------acatatatagtttacacataatacctaatttttcactctaactccatttttatattatttgttcatgatatataggaagctaattggagcaag |
42769875 |
T |
|
| Q |
207 |
atatttttacaaaggctatttggcagatgctggtaaatccacaaatgtaacattccatagtgcacgcgactttgatggtcatggttcacatactttatca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769874 |
atatttttacaaaggctatttggcagatgctggtaaatccacaaatgtaacattccatagtgcacgcgactttgatggtcatggttcacatactttatca |
42769775 |
T |
|
| Q |
307 |
accgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacgagttgcggcctataagg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769774 |
accgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacgagttgcggcctataagg |
42769675 |
T |
|
| Q |
407 |
tatgttggccaccgcttgctgtaggcggtggatgctatgaagcggacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggc |
506 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769674 |
tatgttggccaccgcttgctgtgggcggtggatgctatgaagcagacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggc |
42769575 |
T |
|
| Q |
507 |
gtctgtgggtggtgatcccgtagaattttatgaaagcagtattgctatagggtctttccatgcagttgctaatggcattgttgtagttagttctgctgga |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769574 |
gtctgtgggtggtgatcccgtagaattttatgaaagcagtattgctatagggtctttccatgcagttgctaatggcattgttgtagttagttctgctgga |
42769475 |
T |
|
| Q |
607 |
aatacaggacctaaacccaaaactgcatccaacttggaaccgtggtcgatca |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769474 |
aatacaggacctaaacccaaaactgcatccaacttggaaccgtggtcgatca |
42769423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 186 - 414
Target Start/End: Complemental strand, 42744031 - 42743797
Alignment:
| Q |
186 |
taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt |
279 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||| |||||| | || || | | |||||| ||||||| |||||||||| |||||| |
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| T |
42744031 |
taggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcacgtgacttt |
42743932 |
T |
|
| Q |
280 |
gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac |
379 |
Q |
| |
|
|| |||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42743931 |
gaaggtcatggttcacatactttatcaactgctggaggaaatttcgttgccaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcac |
42743832 |
T |
|
| Q |
380 |
ctaacgcacgagttgcggcctataaggtatgttgg |
414 |
Q |
| |
|
| || ||||||||||| ||||||||||| |||||| |
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|
| T |
42743831 |
caaaagcacgagttgcagcctataaggtttgttgg |
42743797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 186 - 414
Target Start/End: Complemental strand, 42753390 - 42753156
Alignment:
| Q |
186 |
taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt |
279 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||| |||||| | || || | | |||||| ||||||| |||||||||| |||||| |
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|
| T |
42753390 |
taggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcacgtgacttt |
42753291 |
T |
|
| Q |
280 |
gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac |
379 |
Q |
| |
|
|| |||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42753290 |
gaaggtcatggttcacatactttatcaactgctggaggaaatttcgttgccaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcac |
42753191 |
T |
|
| Q |
380 |
ctaacgcacgagttgcggcctataaggtatgttgg |
414 |
Q |
| |
|
| || ||||||||||| ||||||||||| |||||| |
|
|
| T |
42753190 |
caaaagcacgagttgcagcctataaggtttgttgg |
42753156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 190 - 414
Target Start/End: Complemental strand, 42763002 - 42762778
Alignment:
| Q |
190 |
aagctaattggagcaagatatttttacaaaggctatttggcagatgctggtaaatccacaaatgtaacattccatagtgcacgcgactttgatggtcatg |
289 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||| | ||||| || || || | ||| ||||||| | | ||||||||||| || ||| ||||||| |
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|
| T |
42763002 |
aagcttattggagcaagatatttttttaaaggctttctggcaaatccttatagagccaaaaatgtatcgcttcatagtgcacgggatagtgaaggtcatg |
42762903 |
T |
|
| Q |
290 |
gttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacg |
389 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |
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|
| T |
42762902 |
gttcacacactttatcaactgctggaggaaatttcgttgctaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacg |
42762803 |
T |
|
| Q |
390 |
agttgcggcctataaggtatgttgg |
414 |
Q |
| |
|
|||||| ||||||||||| |||||| |
|
|
| T |
42762802 |
agttgcagcctataaggtttgttgg |
42762778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 263 - 414
Target Start/End: Complemental strand, 42717320 - 42717169
Alignment:
| Q |
263 |
atagtgcacgcgactttgatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaac |
362 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |||||||||||||||| || ||||||||||||||||| |||||||||||||||||| ||||| ||||| |
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|
| T |
42717320 |
atagtgcacgtgacattgatggtcatggtacacatactttatcaactgccggaggaaattttgttgctaatgcaagtgtatttggctatggcaatggaac |
42717221 |
T |
|
| Q |
363 |
agcaagtggtggatcacctaacgcacgagttgcggcctataaggtatgttgg |
414 |
Q |
| |
|
||||||||||||||| || || |||||||||| ||||||||||| |||||| |
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|
| T |
42717220 |
agcaagtggtggatcgccaaaagcacgagttgtagcctataaggtttgttgg |
42717169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 186 - 414
Target Start/End: Original strand, 42734482 - 42734716
Alignment:
| Q |
186 |
taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt |
279 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||| |||||| | || || | | |||||| ||||||| ||||||| || ||| | |
|
|
| T |
42734482 |
taggaagcttattggcgcaagatatttttacaaaggctatatggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcccgtgacagt |
42734581 |
T |
|
| Q |
280 |
gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac |
379 |
Q |
| |
|
| |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||| | |
|
|
| T |
42734582 |
gtaggtcatggttcacatactttatcaactgctggaggaaattttgttgctaatgcaagtgtatttggctatggaaatggaacagcaagtggtggatcgc |
42734681 |
T |
|
| Q |
380 |
ctaacgcacgagttgcggcctataaggtatgttgg |
414 |
Q |
| |
|
| || ||||||||| | ||||||||||| |||||| |
|
|
| T |
42734682 |
caaaagcacgagtttccgcctataaggtttgttgg |
42734716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 454 - 575
Target Start/End: Complemental strand, 42717147 - 42717023
Alignment:
| Q |
454 |
attttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggtggtgat---cccgtagaattttatgaaagcagtattg |
550 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| ||||| || ||| |||| | |||| ||||||||||| || || |||||||| || ||||||||| |
|
|
| T |
42717147 |
attttggctggttttgaagctgccataagtgatggtgtcgacgtgctttcagtgtctttgggtggtgattttcctgttgaattttacgatagcagtattt |
42717048 |
T |
|
| Q |
551 |
ctatagggtctttccatgcagttgc |
575 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
42717047 |
ccatagggtctttccatgcagttgc |
42717023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 442 - 575
Target Start/End: Original strand, 42734726 - 42734862
Alignment:
| Q |
442 |
tatgaagcggacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggtggtga---tcccgtagaattttatg |
538 |
Q |
| |
|
||||| || || |||||||||||||| |||||||||||| ||| |||||||||||| |||| | |||| || ||||||| ||| || |||||| | | |
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|
| T |
42734726 |
tatgatgcagatattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcagtgtctttgagtggtgattttcctgttgaatttcacg |
42734825 |
T |
|
| Q |
539 |
aaagcagtattgctatagggtctttccatgcagttgc |
575 |
Q |
| |
|
| ||||||||| | ||||||||||||||||||||||| |
|
|
| T |
42734826 |
atagcagtatttccatagggtctttccatgcagttgc |
42734862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 435 - 516
Target Start/End: Complemental strand, 42762775 - 42762694
Alignment:
| Q |
435 |
tggatgctatgaagcggacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggt |
516 |
Q |
| |
|
|||||| ||||| || ||||||||||||||||| |||||||||||| ||| |||||||||||| |||||| |||| ||||| |
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|
| T |
42762775 |
tggatgttatgatgcagacattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcggtgtctttgggt |
42762694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 42717408 - 42717371
Alignment:
| Q |
184 |
tataggaagctaattggagcaagatatttttacaaagg |
221 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42717408 |
tataggaagcttattggagcaagatatttttacaaagg |
42717371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 248 - 407
Target Start/End: Original strand, 23040511 - 23040670
Alignment:
| Q |
248 |
caaatgtaacattccatagtgcacgcgactttgatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttgg |
347 |
Q |
| |
|
|||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
23040511 |
caaatgaaacattcaatagtgcacgtgactttgatggtcatggttcacatactttatcaactgttggaggaaatttcgttgctaatgcgagtgtatttgg |
23040610 |
T |
|
| Q |
348 |
caatggcctaggaacagcaagtggtggatcacctaacgcacgagttgcggcctataaggt |
407 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| || || |||||||| ||||||||||| |
|
|
| T |
23040611 |
caatggccgaggaacagcaagtggtggatcaccaaaagctcgagttgcagcctataaggt |
23040670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 23040443 - 23040488
Alignment:
| Q |
186 |
taggaagctaattggagcaagatatttttacaaaggctatttggca |
231 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
23040443 |
taggaagcttattggagcaagatattttaacaaaggctatctggca |
23040488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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