View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_70 (Length: 237)
Name: NF17209_low_70
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_70 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 32832413 - 32832635
Alignment:
| Q |
1 |
tacgtctttattgagtgtcaccccaagttttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgtgttctaagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32832413 |
tacgtctttattgagtgtcaccccaagttttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgtgttctaagc |
32832512 |
T |
|
| Q |
101 |
gacctaactaacttgtattttgcagttttccttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaagatgcaact |
200 |
Q |
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|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32832513 |
gacctaactaacttgtattttgcggttttacttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaagatgcaact |
32832612 |
T |
|
| Q |
201 |
ttgatctttctttaccgggatac |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
32832613 |
ttgatctttctttaccgggatac |
32832635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 32845694 - 32845916
Alignment:
| Q |
1 |
tacgtctttattgagtgtcaccccaagttttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgtgttctaagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32845694 |
tacgtctttattgagtgtcaccccaagttttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgtgttctaagc |
32845793 |
T |
|
| Q |
101 |
gacctaactaacttgtattttgcagttttccttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaagatgcaact |
200 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32845794 |
gacctaactaacttgtattttgcggttttacttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaagatgcaact |
32845893 |
T |
|
| Q |
201 |
ttgatctttctttaccgggatac |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
32845894 |
ttgatctttctttaccgggatac |
32845916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17932230 - 17932008
Alignment:
| Q |
1 |
tacgtctttattgagtgtcaccccaagttttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgtgttctaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17932230 |
tacgtctttattgagtgtcaccccaagtattccatctgaatcttcttcccttctacaagcaaaataagccttgtcatcaaaggctctttgtgttctaagc |
17932131 |
T |
|
| Q |
101 |
gacctaactaacttgtattttgcagttttccttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaagatgcaact |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
17932130 |
gacctaactaacttgtattttgcggttttacttgcttcttttttgtttgagagaagaattgctgcactacccattctaaagctacagttaagatgcaact |
17932031 |
T |
|
| Q |
201 |
ttgatctttctttaccgggatac |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
17932030 |
ttgatctttctttaccgggatac |
17932008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 46188742 - 46188530
Alignment:
| Q |
11 |
ttgagtgtcaccccaagttttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgtgttctaagcgacctaacta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| || |||||||| ||||||||||||||||| | ||||| || |
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| T |
46188742 |
ttgagtgtcaccccaagttttccatctgaatcttcttcccttatacaggataaataagctttatcatcaaaagctctttgtgttctaagtgtcctaagta |
46188643 |
T |
|
| Q |
111 |
acttgtattttgcagttttccttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaagatgcaactttgatctttc |
210 |
Q |
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|| ||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| | ||||||||||| |||| |
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| T |
46188642 |
acaaatattttgcatttttacttgcttcttttttgtttgaaagaagaattgctgcacttcccattctaaagagacagttaataagcaactttgatttttc |
46188543 |
T |
|
| Q |
211 |
tttaccgggatac |
223 |
Q |
| |
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||||| |||||| |
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| T |
46188542 |
cttacctggatac |
46188530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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