View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_71 (Length: 236)
Name: NF17209_low_71
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 40749718 - 40749936
Alignment:
| Q |
3 |
aaaaggaaacacctaacgcctcatctaagaggggcagagtttgatacaaagtaaggatcatgtaaagtttttcgttcccattttgacaaaaacaaattgc |
102 |
Q |
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| T |
40749718 |
aaaaggaaacacctaacacctcatctaagaggggcagagtttgatacaaagtaaggatcatgtaaagtttttcgttcccattttgacaaaaacaaattgc |
40749817 |
T |
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| Q |
103 |
acacacgttgtcttctataataaataaagatcacccactccttcgacatgaatgccctaatgtgctccaaaagattggcataatggtgaaaatgctagat |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40749818 |
acacacgttgtcttctataataaataaagatcacccactccttcgacatgaatgccctaatgtgctccaaaagattggcattatggtgaaaatgctagat |
40749917 |
T |
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| Q |
203 |
ctcacactatgagctaagt |
221 |
Q |
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||||||||||||||||||| |
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| T |
40749918 |
ctcacactatgagctaagt |
40749936 |
T |
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