View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_72 (Length: 236)
Name: NF17209_low_72
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 31821208 - 31821428
Alignment:
| Q |
1 |
aaaatattttctactcggaaactgtgacaatgaaaggcaaaaataacaaaagcatttccattttctttgttgttttctccctattcctctttggtgtctt |
100 |
Q |
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| T |
31821208 |
aaaatattttctactcggaaactgtgacaatgaaaggcaaaaataacaaaagcatttccattttctttgttgttttctccctattcctctttggtgtctt |
31821307 |
T |
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| Q |
101 |
catgtacaatgaagacgttaagtcaatagcggagttttcattctcgagtatcaaatacaaaactcaagaaatccaagaagaaaaatctgaaccagacaat |
200 |
Q |
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| T |
31821308 |
catgtacaatgaagacgttaagtcaatagcggagttttcattctcgagtatcaaatacaaaactcaagaaatccaagaagaaaaatctgaaccagacaat |
31821407 |
T |
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| Q |
201 |
tctgttcaaagagatggcaaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
31821408 |
tctgttcaaagagatggcaaa |
31821428 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 35688074 - 35688129
Alignment:
| Q |
87 |
ctctttggtgtcttcatgtacaatgaagacgttaagtcaatagcggagttttcatt |
142 |
Q |
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| T |
35688074 |
ctctttgctgtcttcatatacaatgaagacgttaaatcaatagctgagtttccatt |
35688129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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