View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_73 (Length: 231)
Name: NF17209_low_73
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_73 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 5637094 - 5636881
Alignment:
| Q |
1 |
tctgcactttcagccatgacaatttgaacannnnnnnnncactaattttccaaatattcaagtatactagtgctacactataaacatctaggatattttt |
100 |
Q |
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| T |
5637094 |
tctgcactttcagccatgacaatttgaacatttttttttcactaattttccaaatattcaagtatactagtgctactctataaacatgtaggatattttt |
5636995 |
T |
|
| Q |
101 |
caaagcttgattttaaacaaagaaatactataaaggattatatcttacaacgaccaactactactagaaaatgaagaagttctaattagataaattccct |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5636994 |
caaagcttgattttaaacaaaaaaatactataaaggattatatcttacaaagaccaactactactagaaaatgcagaagttctaattagataaattccct |
5636895 |
T |
|
| Q |
201 |
actaggaaagcttg |
214 |
Q |
| |
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|||||||||||||| |
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| T |
5636894 |
actaggaaagcttg |
5636881 |
T |
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