View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_75 (Length: 228)
Name: NF17209_low_75
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_75 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 36292221 - 36292434
Alignment:
| Q |
1 |
tgaagttaatagggaacacaccattggtatatcttaacaacataacagaagggtgtgtagctcgtattgctgctaagctagaatacttgcaatcctgctg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36292221 |
tgaagttaatagggaacacaccattggtatatcttaacaacattacagaagggtgtgtagctcgtattgctgctaagctagaatacttgcaatcctgctg |
36292320 |
T |
|
| Q |
101 |
cagtgtcaaagataggcatggaattctattatttcacaaactaaaactgttttgaaattgttaagttttaagattcttaataagaaattaagaatttgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36292321 |
cagtgtcaaagataggcatggaattctattatttcacaaactaaaactgttttgaaattgttaagttttaagattcttaataagaaattaagaatttgta |
36292420 |
T |
|
| Q |
201 |
ttgataatcttgtt |
214 |
Q |
| |
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|||||||||||||| |
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| T |
36292421 |
ttgataatcttgtt |
36292434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 36280748 - 36280971
Alignment:
| Q |
1 |
tgaagttaatagggaacacaccattggtatatcttaacaacataacagaagggtgtgtagctcgtattgctgctaagctagaatacttgcaatcctgctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36280748 |
tgaagttaatagggaacacaccattggtatatctaaacaacataacagaaggatgtgtagctcgtattgctgctaagctagaatacttgcaatcctgctg |
36280847 |
T |
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| Q |
101 |
cagtgtcaaagataggcatg-gaattctattatttcacaaactaaaactgttttgaaattgttaagttttaagattcttaataagaaattaagaatttgt |
199 |
Q |
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| T |
36280848 |
tagtgttaaagataggtatgtaaatggaataatttcacaaacttgaactgttttaatattgttaggttttaagattcttagtaagaaattaagaatttgt |
36280947 |
T |
|
| Q |
200 |
attgataatcttgttcatctcact |
223 |
Q |
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| ||||||| ||||| ||||||| |
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| T |
36280948 |
aatgataatattgtttttctcact |
36280971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 36286252 - 36286377
Alignment:
| Q |
1 |
tgaagttaatagggaacacaccattggtatatcttaacaacataacagaagggtgtgtagctcgtattgctgctaagctagaatacttgcaatcctgctg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
36286252 |
tgaagttaatagggaacacaccattggtatatctaaacaacattacagaagggtgtgtagctcgtattgctgctaagctagagtacttgcaatcttgctg |
36286351 |
T |
|
| Q |
101 |
cagtgtcaaagataggcatggaattc |
126 |
Q |
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|||||||||||||||||||||||||| |
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| T |
36286352 |
cagtgtcaaagataggcatggaattc |
36286377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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