View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_78 (Length: 211)
Name: NF17209_low_78
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_78 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 31052942 - 31053140
Alignment:
| Q |
1 |
ttaaatctatatcacttcctatgaatctctctggataaaactcttctggatccttccatacttctgggtctctatggatcgccaatgcattcacgtacac |
100 |
Q |
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| T |
31052942 |
ttaaatctatatcacttcctatgaatctctctggataaaactcttctggatccttccatacttctgggtctctatggatcgccaatgcattcacgtacac |
31053041 |
T |
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| Q |
101 |
caatgtcttgtctggaatgtcgtaccctgcaatgttgcaatttgtcattgtttctcttggtaaaagtataggcaaaattgggtacaatctcattgattc |
199 |
Q |
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| T |
31053042 |
caatgtcttgtctggaatgtcgtaccctgcaatgttgcaatttgtcattgtttctcttggtaaaagtataggcaaaattgggtacaatctcattgattc |
31053140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 31039452 - 31039650
Alignment:
| Q |
1 |
ttaaatctatatcacttcctatgaatctctctggataaaactcttctggatccttccatacttctgggtctctatggatcgccaatgcattcacgtacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31039452 |
ttaaatctatatcacttcctatgaatctctctggataaaactcttctggatccttccatacttctgggtctctatggatcgccaatgcattcacgtacac |
31039551 |
T |
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| Q |
101 |
caatgtcttgtctggaatgtcgtaccctgcaatgttgcaatttgtcattgtttctcttggtaaaagtataggcaaaattgggtacaatctcattgattc |
199 |
Q |
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| T |
31039552 |
caatgtcttgtctggaatgtcgtaccctgcaatgttgcaatttgtcattgtttctcttggtaaaagtataggcaaaattgggtacaatctcatcgattc |
31039650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 31071774 - 31071941
Alignment:
| Q |
1 |
ttaaatctatatcacttcctatgaatctctctggataaaactcttctggatccttccatacttctgggtctctatggatcgccaatgcattcacgtacac |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| ||| | || || | |||||| |
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| T |
31071774 |
ttaaatctatatcactacctatgaatctctctggataaaactcttctggatccttccatgcttccggatctctatggattgcccacgcgttaatgtacac |
31071873 |
T |
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| Q |
101 |
caatgtcttgtctggaatgtcgtaccctgcaatgttgcaatttgtcattgtttctcttggtaaaagta |
168 |
Q |
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|||||||||||||||||| ||||||||| | |||| ||| ||| |||| ||||||||||||||||||| |
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| T |
31071874 |
caatgtcttgtctggaatttcgtacccttcgatgtcgcactttttcatcgtttctcttggtaaaagta |
31071941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 9400279 - 9400383
Alignment:
| Q |
14 |
acttcctatgaatctctctggataaaactcttctggatccttccatacttctgggtctctatggatcgccaatgcattcacgtacaccaatgtcttgtct |
113 |
Q |
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|||| ||| |||||||||||||||||||||||||||||| ||||| || | | ||||||||| || ||| | |||||||| ||||| | |||||| || |
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| T |
9400279 |
actttctaagaatctctctggataaaactcttctggatctttccaaacattagagtctctatgaatagcccaagcattcacatacactattgtctttgct |
9400378 |
T |
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| Q |
114 |
ggaat |
118 |
Q |
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||||| |
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| T |
9400379 |
ggaat |
9400383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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