View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17209_low_79 (Length: 208)

Name: NF17209_low_79
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17209_low_79
NF17209_low_79
[»] chr3 (6 HSPs)
chr3 (83-190)||(3211465-3211572)
chr3 (11-85)||(3212029-3212103)
chr3 (83-163)||(3207996-3208076)
chr3 (83-149)||(3191098-3191164)
chr3 (11-85)||(14071927-14072005)
chr3 (11-85)||(17388276-17388354)
[»] chr1 (4 HSPs)
chr1 (11-85)||(17986380-17986458)
chr1 (11-85)||(52755556-52755629)
chr1 (11-85)||(19364474-19364552)
chr1 (11-56)||(28207735-28207780)
[»] scaffold0031 (1 HSPs)
scaffold0031 (11-85)||(77649-77727)
[»] chr7 (5 HSPs)
chr7 (11-85)||(17946535-17946613)
chr7 (11-85)||(9311331-9311409)
chr7 (12-85)||(9258845-9258922)
chr7 (11-85)||(3210941-3211019)
chr7 (11-56)||(8787482-8787527)
[»] chr5 (2 HSPs)
chr5 (11-85)||(17408925-17409003)
chr5 (11-85)||(21382084-21382162)
[»] chr4 (2 HSPs)
chr4 (11-85)||(7197020-7197098)
chr4 (11-55)||(16954112-16954156)
[»] chr6 (1 HSPs)
chr6 (24-85)||(20105861-20105926)
[»] chr2 (1 HSPs)
chr2 (11-85)||(23704072-23704150)
[»] scaffold0072 (1 HSPs)
scaffold0072 (12-85)||(60515-60591)
[»] scaffold0011 (1 HSPs)
scaffold0011 (12-83)||(162290-162364)
[»] chr8 (2 HSPs)
chr8 (11-56)||(1990695-1990740)
chr8 (11-85)||(22818036-22818114)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 3211572 - 3211465
Alignment:
Q  83 tgatagttggtttatattgttgagagtctttccaaagctcatgtgcatacatcaaacctaatcatgacgtagaaaaatgaannnnnnncagtggtaaagg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||       ||||||||||||    
T  3211572 tgatagttggtttatattgttgagagtctttccaaagctcatgtgcatacatcaaacctaatcataacgtagaaaaatgaatttttttcagtggtaaagg 3211473  T
Q  183 ttgtattt 190  Q
    ||||||||    
T  3211472 ttgtattt 3211465  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 3212103 - 3212029
Alignment:
Q  11 gaagcaaaggcaacaaaagagaaccctgaaacttggcacggccgtgtgggagcacgggccgtgctacctctctga 85  Q
    ||||||||  ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  3212103 gaagcaaaaacaacaaaagagaaccctgaagtttggcacggccgtgtgggagcacgggccgtgctacctctctga 3212029  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 3208076 - 3207996
Alignment:
Q  83 tgatagttggtttatattgttgagagtctttccaaagctcatgtgcatacatcaaacctaatcatgacgtagaaaaatgaa 163  Q
    ||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| ||| ||||||||    
T  3208076 tgatagttgctttatattgttgagactcattccatagctcatgtgcatacatcaaacctaatcatgacctaggaaaatgaa 3207996  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 3191164 - 3191098
Alignment:
Q  83 tgatagttggtttatattgttgagagtctttccaaagctcatgtgcatacatcaaacctaatcatga 149  Q
    ||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  3191164 tgatagttgctttatattgttgagactcattccatagctcatgtgcatacatcaaacctaatcatga 3191098  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 14071927 - 14072005
Alignment:
Q  11 gaagcaaaggcaacaaaagagaaccctgaaacttggcacggccgt----gtgggagcacgggccgtgctacctctctga 85  Q
    |||||||| ||| ||||||||||||||||| ||||||||||||||    |||||||||| |||||||| ||||||||||    
T  14071927 gaagcaaaagcagcaaaagagaaccctgaagcttggcacggccgtgctagtgggagcacaggccgtgccacctctctga 14072005  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 17388354 - 17388276
Alignment:
Q  11 gaagcaaaggcaacaaaagagaaccctgaaacttggcacggccgt----gtgggagcacgggccgtgctacctctctga 85  Q
    |||||||| |||| |||||||||| ||||| ||||||||||||||    |||||||| |||||||||| ||||||||||    
T  17388354 gaagcaaaagcaataaaagagaactctgaagcttggcacggccgtgccagtgggagcgcgggccgtgccacctctctga 17388276  T

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Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 17986458 - 17986380
Alignment:
Q  11 gaagcaaaggcaacaaaagagaaccctgaaacttggcacggccgt----gtgggagcacgggccgtgctacctctctga 85  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||    ||||||||||||||||||| ||||||||||    
T  17986458 gaagcaaaagcaacaaaagagaaccctgaagcttggcacggccgtgccagtgggagcacgggccgtgccacctctctga 17986380  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 52755556 - 52755629
Alignment:
Q  11 gaagcaaaggcaacaaaagagaaccctgaaacttggcacggccgtgtgggagcacgggccgtgctacctctctga 85  Q
    |||||||| ||| ||||||||||||||||| ||||||||||||  ||||||||||||||||||| ||||||||||    
T  52755556 gaagcaaaagcagcaaaagagaaccctgaagcttggcacggcc-agtgggagcacgggccgtgccacctctctga 52755629  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 19364552 - 19364474
Alignment:
Q  11 gaagcaaaggcaacaaaagagaaccctgaaacttggcacggccgt----gtgggagcacgggccgtgctacctctctga 85  Q
    |||||||| ||| ||||||||||||||||| ||||||| | ||||    ||||||||||||||| ||| ||||||||||    
T  19364552 gaagcaaaagcagcaaaagagaaccctgaaccttggcatgaccgtgccggtgggagcacgggccctgccacctctctga 19364474  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 28207780 - 28207735
Alignment:
Q  11 gaagcaaaggcaacaaaagagaaccctgaaacttggcacggccgtg 56  Q
    |||||||| ||| ||||||||||||||||| |||||||||||||||    
T  28207780 gaagcaaatgcagcaaaagagaaccctgaagcttggcacggccgtg 28207735  T

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Target: scaffold0031 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 77727 - 77649
Alignment:
Q  11 gaagcaaaggcaacaaaagagaaccctgaaacttggcacggccgt----gtgggagcacgggccgtgctacctctctga 85  Q
    |||||||| ||| ||||||||||||||||| ||||||||||||||    ||||||||||||||||||| ||||||||||    
T  77727 gaagcaaaagcagcaaaagagaaccctgaagcttggcacggccgtgccagtgggagcacgggccgtgccacctctctga 77649  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 17946613 - 17946535
Alignment:
Q  11 gaagcaaaggcaacaaaagagaaccctgaaacttggcacggccgtg----tgggagcacgggccgtgctacctctctga 85  Q
    |||||||| ||| ||||||||||||||||| |||||||||||||||    ||||||||||||| |||| ||||||||||    
T  17946613 gaagcaaaagcagcaaaagagaaccctgaagcttggcacggccgtgccactgggagcacgggctgtgccacctctctga 17946535  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 9311409 - 9311331
Alignment:
Q  11 gaagcaaaggcaacaaaagagaaccctgaaacttggcacggccgt----gtgggagcacgggccgtgctacctctctga 85  Q
    |||||||| ||| ||||||||||||||||| |||||||| |||||    ||||||||||||||||||| |||| |||||    
T  9311409 gaagcaaaagcagcaaaagagaaccctgaagcttggcacagccgtgccagtgggagcacgggccgtgccacctgtctga 9311331  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 9258845 - 9258922
Alignment:
Q  12 aagcaaaggcaacaaaagagaaccctgaaacttggcacggccgt----gtgggagcacgggccgtgctacctctctga 85  Q
    ||||||| ||| ||||||||||||||||| |||||||| |||||    ||||||||||||||||||| |||| |||||    
T  9258845 aagcaaaagcagcaaaagagaaccctgaagcttggcacagccgtgccagtgggagcacgggccgtgccacctgtctga 9258922  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 3210941 - 3211019
Alignment:
Q  11 gaagcaaaggcaacaaaagagaaccctgaaacttggcacggccgt----gtgggagcacgggccgtgctacctctctga 85  Q
    |||||||| ||| ||||||||||| ||| | ||||||||||||||    |||||||||||||||| || | ||||||||    
T  3210941 gaagcaaaagcagcaaaagagaactctgtagcttggcacggccgtaccagtgggagcacgggccgggccatctctctga 3211019  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 8787482 - 8787527
Alignment:
Q  11 gaagcaaaggcaacaaaagagaaccctgaaacttggcacggccgtg 56  Q
    |||||||| ||| |||||||| |||||||| |||||||||||||||    
T  8787482 gaagcaaaagcagcaaaagagcaccctgaagcttggcacggccgtg 8787527  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 17408925 - 17409003
Alignment:
Q  11 gaagcaaaggcaacaaaagagaaccctgaaacttggcacggccgt----gtgggagcacgggccgtgctacctctctga 85  Q
    |||||||| ||| ||||||||||||||||| ||||||||| ||||    ||||||||||||||||||| ||||||||||    
T  17408925 gaagcaaaagcagcaaaagagaaccctgaagcttggcacgaccgtgctagtgggagcacgggccgtgccacctctctga 17409003  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 21382162 - 21382084
Alignment:
Q  11 gaagcaaaggcaacaaaagagaaccctgaaacttggcacggccgt----gtgggagcacgggccgtgctacctctctga 85  Q
    |||||||| |||||||||||||||||  |||||||||||||||||    ||||||||||||| ||||| | ||||||||    
T  21382162 gaagcaaaagcaacaaaagagaacccataaacttggcacggccgtgccagtgggagcacgggtcgtgccatctctctga 21382084  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 7197098 - 7197020
Alignment:
Q  11 gaagcaaaggcaacaaaagagaaccctgaaacttggcacggccgt----gtgggagcacgggccgtgctacctctctga 85  Q
    |||||||| ||| ||||||||||||||||| ||||||| ||||||    ||||||||||||||||||| ||||||||||    
T  7197098 gaagcaaaagcagcaaaagagaaccctgaagcttggcatggccgtgccagtgggagcacgggccgtgccacctctctga 7197020  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 16954112 - 16954156
Alignment:
Q  11 gaagcaaaggcaacaaaagagaaccctgaaacttggcacggccgt 55  Q
    |||||||| ||| |||||||| |||||||| ||||||||||||||    
T  16954112 gaagcaaaagcagcaaaagagcaccctgaagcttggcacggccgt 16954156  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 20105861 - 20105926
Alignment:
Q  24 caaaagagaaccctgaaacttggcacggccgt----gtgggagcacgggccgtgctacctctctga 85  Q
    ||||||||||||||||| ||||||||||||||    ||||||||||||||||||| ||||||||||    
T  20105861 caaaagagaaccctgaagcttggcacggccgtgctagtgggagcacgggccgtgccacctctctga 20105926  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 23704150 - 23704072
Alignment:
Q  11 gaagcaaaggcaacaaaagagaaccctgaaacttggcacggccgt----gtgggagcacgggccgtgctacctctctga 85  Q
    |||||||| | | ||||||||||||||||| ||||||||||||||    ||||||||||||||||||| || |||||||    
T  23704150 gaagcaaaagtagcaaaagagaaccctgaagcttggcacggccgtgccagtgggagcacgggccgtgccacttctctga 23704072  T

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Target: scaffold0072 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 60591 - 60515
Alignment:
Q  12 aagcaaaggcaacaaaagagaaccctgaaacttggcacggccgt----gtgggagcacgggccgtgctacctctctga 85  Q
    ||||||| ||||||||||||| | ||||| ||||||||||||||    |||||||||| |||||||| ||||||||||    
T  60591 aagcaaaagcaacaaaagaga-ctctgaagcttggcacggccgtgccagtgggagcacaggccgtgccacctctctga 60515  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 162364 - 162290
Alignment:
Q  12 aagcaaaggcaacaaaagagaaccctgaaacttggcacggccgtg----tgggagcacgggccgtgctacctctct 83  Q
    ||||||| ||||||||||||| | ||||| |||||||||||| ||    |||||||||||||||||| ||||||||    
T  162364 aagcaaaagcaacaaaagaga-ctctgaagcttggcacggccatgccagtgggagcacgggccgtgccacctctct 162290  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 1990695 - 1990740
Alignment:
Q  11 gaagcaaaggcaacaaaagagaaccctgaaacttggcacggccgtg 56  Q
    |||||||| ||| ||||||||||||||||| |||||||| ||||||    
T  1990695 gaagcaaaagcagcaaaagagaaccctgaagcttggcacagccgtg 1990740  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 22818114 - 22818036
Alignment:
Q  11 gaagcaaaggcaacaaaagagaaccctgaaacttggcacggccgt----gtgggagcacgggccgtgctacctctctga 85  Q
    |||||||| |||  |||| ||||||||||| |||||||||| |||    ||||||||| ||||||||| ||||||||||    
T  22818114 gaagcaaaagcagaaaaaaagaaccctgaagcttggcacggtcgtgctagtgggagcatgggccgtgccacctctctga 22818036  T

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