View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17209_low_9 (Length: 656)
Name: NF17209_low_9
Description: NF17209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17209_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 18 - 643
Target Start/End: Original strand, 29145189 - 29145808
Alignment:
| Q |
18 |
acactttaaattgaaggtgtgtctagtatatatccaacacatgtcggacacatttgacactcgtggttacattctctcaaattattactggtgtcaatga |
117 |
Q |
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| T |
29145189 |
acactttaaattgaaggtgtgtctagtat----ccaacacatgtcggacacatttgacactcgtggttacattctctcaaattattactg-tgtcaatga |
29145283 |
T |
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| Q |
118 |
gaagtggcaatgtcgtgtccagtgtcaatgcttcatacgttttcttttttggcacttgtttaggattttccaatcttaattttctgcatttattgctttc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29145284 |
gaagtggcaatgtcgtgtccagtgtcaatgcttcatacgtttt-ttttttggcacttgtttaggattttccaatcttaattttctgcatttattgctttc |
29145382 |
T |
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| Q |
218 |
taagggctctctaattttaaatttatgatatgcttcgtgaatataactaagcaagtttggaagcatatatttgtagaataaccatgactagttttatgaa |
317 |
Q |
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| T |
29145383 |
taagggctctctaattttaaatttatgatatgcttcgtgaatataactaagcaagtttggaagcatatatttgtagaataaccatgactagttttatgaa |
29145482 |
T |
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| Q |
318 |
gcgaattgaattggaccgttgtccacaacttgaatgttcaataattgatgatttgagtaaatatttgagcaggttgtggtattgagggtttctttgcatt |
417 |
Q |
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| T |
29145483 |
gcgaattgaattggaccgttgtccacaacttgaatgttcaataattgatgatttgagtaaatatttgagcaggttgtggtattgagggtttctttgcatt |
29145582 |
T |
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| Q |
418 |
gcaaagggtgtgaagggaagctgaggaaacacatctctaaaatgcaaggtaaggactcgattatgtacatttaaaaaatgtatttaaacgcactaattga |
517 |
Q |
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| T |
29145583 |
gcaaagggtgtgaagggaagctgaggaaacacatctctaaaatgcaaggtaaggactcgattatgtacatttaaaaaatgtatttaaacgcactaattga |
29145682 |
T |
|
| Q |
518 |
tctcgatcatcgatttgaaaccatctttaaataatctttcactgttcaatttaagatcgaacggtcaataaatatgtcacgcatttacggattggaattc |
617 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29145683 |
tctcgatcatcgatttaaaactatctttaaataatctttcactgttcaatttaagatcgaacggtcaataaatatgtcacgcatttacggattggaattc |
29145782 |
T |
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| Q |
618 |
aaatatgagattttaatgttgttgat |
643 |
Q |
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| T |
29145783 |
aaatatgagattttaatgttgttgat |
29145808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 386 - 468
Target Start/End: Original strand, 40454024 - 40454106
Alignment:
| Q |
386 |
gcaggttgtggtattgagggtttctttgcattgcaaagggtgtgaagggaagctgaggaaacacatctctaaaatgcaaggta |
468 |
Q |
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| T |
40454024 |
gcaggttgtggtgttgagggtttctctgcattgtaaaggttgtgaagggaaggtcaggaaacatctctccagaatgcaaggta |
40454106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 386 - 434
Target Start/End: Original strand, 28229335 - 28229383
Alignment:
| Q |
386 |
gcaggttgtggtattgagggtttctttgcattgcaaagggtgtgaaggg |
434 |
Q |
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| T |
28229335 |
gcaggttgtggtgttgagggtttctctgcattgtaaaagttgtgaaggg |
28229383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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