View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_high_100 (Length: 230)
Name: NF1720_high_100
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_100 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 27026394 - 27026623
Alignment:
| Q |
1 |
gaaacataaccaaagttgtgtagagaacatggacctaaatggacttgttacttggatacaaatattttaatatcattaaaaaagtttcttaaaaggaagt |
100 |
Q |
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| T |
27026394 |
gaaacataaccaaagttgtgtagagaacatggacctaaatggacttgttacttggatacaaatattttaatatcattaaaaaagtttcttaaaaggaagt |
27026493 |
T |
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| Q |
101 |
aaggaacagggatgtaaattttcaagatcagaacttcaatcaaaattcagtacacagaaaataacatttaacatatatctaatctctcaaattataatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27026494 |
aaggaacagggatgtaaattttcaagatcagaacttcaatcaaaattcagtacacagaaaataacatttaacatatatctaatctctcaaattataatcc |
27026593 |
T |
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| Q |
201 |
aataaatatacataacatgcagtattatgg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
27026594 |
aataaatatacataacatgcagtattatgg |
27026623 |
T |
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