View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_high_105 (Length: 223)
Name: NF1720_high_105
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_105 |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 48012836 - 48013026
Alignment:
| Q |
12 |
ataatactagttggcatagaactacaataaactaaataaaaatcagaaaaagacgatacaagttcttacacttttcatgttgtaaaaaaacttcatgttg |
111 |
Q |
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| T |
48012836 |
ataatactagttggcatagaactacaataaactaaataaaaatcagaaaaagacgatccaagttcttacactttttatgttgtaaaaaaacttcatgttg |
48012935 |
T |
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| Q |
112 |
taatgaaacaaacaggggaattcnnnnnnnnnnnnnnnnnnnctaaagcccgtatgacatttgttattatcatgcatgcataatattagtaaaaaa |
207 |
Q |
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| T |
48012936 |
taatgaaacaaacaggggaatt-----aaaaaaaaaaaaaaactaaagcacgtatgacatttgttattatcatgcatgcataatattagtaaaaaa |
48013026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 48016053 - 48016102
Alignment:
| Q |
12 |
ataatactagttggcatagaactacaataaactaaataaaaatcagaaaaa |
62 |
Q |
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| T |
48016053 |
ataatactagttggca-agaactacaataaactaaataaaaatcagaaaaa |
48016102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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