View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_high_107 (Length: 220)
Name: NF1720_high_107
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_107 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 40481460 - 40481643
Alignment:
| Q |
19 |
tggaagtcatggcatcagcatatataccaaacggataaaagccggcatttggtgaacataaatttgtgacattactagctataaaccaagctactcttgg |
118 |
Q |
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| T |
40481460 |
tggaagtcatggcatcagcatatataccaaacggataaaagccggcatttggtgaacataaatttgtgacattactagctataaaccaagctactcttgg |
40481559 |
T |
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| Q |
119 |
agcatctttaatactgtgacaattgaagaatccatattggcaatttgatttctccatattgcacacacttttccaacatgcttc |
202 |
Q |
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| T |
40481560 |
agcatctttaatactgtgacaattgaagaatccatattggcaatttgatttctccatattgcacacacttttccaacatgcttc |
40481643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 40512134 - 40512317
Alignment:
| Q |
19 |
tggaagtcatggcatcagcatatataccaaacggataaaagccggcatttggtgaacataaatttgtgacattactagctataaaccaagctactcttgg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512134 |
tggaagtcatggcatcagcatatataccaaacggataaaagccggcatttggtgaacataaatttgtgacattactagctataaaccaagctactcttgg |
40512233 |
T |
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| Q |
119 |
agcatctttaatactgtgacaattgaagaatccatattggcaatttgatttctccatattgcacacacttttccaacatgcttc |
202 |
Q |
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| T |
40512234 |
agcatctttaatactgtgacaattgaagaatccatattggcaatttgatttctccatattgcacacacttttccaacatgcttc |
40512317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 21612663 - 21612599
Alignment:
| Q |
30 |
gcatcagcatatataccaaacggataaaagccggcatttggtgaacataaatttgtgacattact |
94 |
Q |
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|||||| |||||||||||||| |||||||| | ||||||||| |||||||||||||||||||| |
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| T |
21612663 |
gcatcaccatatataccaaactgataaaagagagaatttggtgagcataaatttgtgacattact |
21612599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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