View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1720_high_111 (Length: 210)

Name: NF1720_high_111
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1720_high_111
NF1720_high_111
[»] scaffold0001 (1 HSPs)
scaffold0001 (11-180)||(155721-155890)
[»] chr7 (1 HSPs)
chr7 (14-150)||(6445108-6445243)
[»] chr6 (1 HSPs)
chr6 (81-144)||(14976714-14976777)
[»] chr4 (1 HSPs)
chr4 (83-150)||(41285836-41285903)
[»] chr5 (2 HSPs)
chr5 (44-150)||(18953567-18953672)
chr5 (83-135)||(28421566-28421618)
[»] chr8 (3 HSPs)
chr8 (6-70)||(14349603-14349667)
chr8 (114-151)||(17429224-17429261)
chr8 (84-133)||(37296596-37296645)
[»] scaffold0140 (1 HSPs)
scaffold0140 (91-133)||(26506-26548)
[»] chr3 (3 HSPs)
chr3 (81-150)||(3786567-3786636)
chr3 (81-150)||(3824260-3824329)
chr3 (83-143)||(31302380-31302440)
[»] chr2 (2 HSPs)
chr2 (84-133)||(10886854-10886903)
chr2 (81-150)||(12094124-12094193)


Alignment Details
Target: scaffold0001 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 11 - 180
Target Start/End: Original strand, 155721 - 155890
Alignment:
Q  11 catcatcatggctcccgcgaatctatgctctggggttacacttcccatgaattcataaccgttgagccttatgtgtgccttacaatggctctgcaaacgc 110  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  155721 catcatcatggctcccgcgaatctctgctcgggggttacacttcccatgaattcataaccgttgagccttatgtgtgccttacaacggctctgcaaacgc 155820  T
Q  111 actcctctatataaaggggactcttagtagtcccaaaggttttaatcaactctctctaaacccttattat 180  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||    
T  155821 actcctctatataaaggggactctcagtagtcccaaaggtttgaatcaactctctctaaaccctcattat 155890  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 6445243 - 6445108
Alignment:
Q  14 catcatggctcccgcgaatctatgctctggggttacacttcccatgaattcataaccgttgagccttatgtgtgccttacaatggctctgcaaacgcact 113  Q
    ||||||||||||||||||||| | ||  | ||| |||||||| | |||||  |||||| |||||     ||||||||||||| |||||||||||| | |     
T  6445243 catcatggctcccgcgaatctcttcttggcggtgacacttcctacgaatttgtaaccgatgagcacgc-gtgtgccttacaacggctctgcaaacactca 6445145  T
Q  114 cctctatataaaggggactcttagtagtcccaaaggt 150  Q
    |||||||||||||||||||||| | |||||| |||||    
T  6445144 cctctatataaaggggactctttgcagtccccaaggt 6445108  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 14976777 - 14976714
Alignment:
Q  81 atgtgtgccttacaatggctctgcaaacgcactcctctatataaaggggactcttagtagtccc 144  Q
    ||||||||||||||| | |||||||||| | | |||||||||||||||||||||||| ||||||    
T  14976777 atgtgtgccttacaacgactctgcaaacacgcacctctatataaaggggactcttagcagtccc 14976714  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 41285836 - 41285903
Alignment:
Q  83 gtgtgccttacaatggctctgcaaacgcactcctctatataaaggggactcttagtagtcccaaaggt 150  Q
    ||||||||||||||| |||||||||| | | |||||||||||||||||||||| | |||||| |||||    
T  41285836 gtgtgccttacaatgactctgcaaacactcacctctatataaaggggactcttcgcagtccccaaggt 41285903  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 18953672 - 18953567
Alignment:
Q  44 ggttacacttcccatgaattcataaccgttgagccttatgtgtgccttacaatggctctgcaaacgcactcctctatataaaggggactcttagtagtcc 143  Q
    |||||||||||| | |||||| ||||||  ||||   ||||||||||||||| ||||||| |||| | | |||||||||||||||||||||| | |||||    
T  18953672 ggttacacttcctacgaattcgtaaccgccgagcac-atgtgtgccttacaacggctctgaaaacacccacctctatataaaggggactcttcgcagtcc 18953574  T
Q  144 caaaggt 150  Q
    | |||||    
T  18953573 ccaaggt 18953567  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 28421566 - 28421618
Alignment:
Q  83 gtgtgccttacaatggctctgcaaacgcactcctctatataaaggggactctt 135  Q
    ||||||||||||  |||| ||||||| | | ||||||||||||||||||||||    
T  28421566 gtgtgccttacagcggctatgcaaacacccacctctatataaaggggactctt 28421618  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 14349603 - 14349667
Alignment:
Q  6 atggacatcatcatggctcccgcgaatctatgctctggggttacacttcccatgaattcataacc 70  Q
    |||| ||| ||||||||||| |||||||| | ||| |||||||||||||| |||||||| |||||    
T  14349603 atggtcattatcatggctcctgcgaatctttcctcgggggttacacttcctatgaattcgtaacc 14349667  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 17429224 - 17429261
Alignment:
Q  114 cctctatataaaggggactcttagtagtcccaaaggtt 151  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  17429224 cctctatataaaggggactcttagcagtccccaaggtt 17429261  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 37296596 - 37296645
Alignment:
Q  84 tgtgccttacaatggctctgcaaacgcactcctctatataaaggggactc 133  Q
    |||||||||||| |||||||||||| | | ||||||||| ||||||||||    
T  37296596 tgtgccttacaacggctctgcaaacacccacctctatatgaaggggactc 37296645  T

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Target: scaffold0140 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 26548 - 26506
Alignment:
Q  91 tacaatggctctgcaaacgcactcctctatataaaggggactc 133  Q
    ||||| |||||||||||| ||| ||||||||||||||||||||    
T  26548 tacaacggctctgcaaacacacacctctatataaaggggactc 26506  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 3786636 - 3786567
Alignment:
Q  81 atgtgtgccttacaatggctctgcaaacgcactcctctatataaaggggactcttagtagtcccaaaggt 150  Q
    ||||||||| || || |||||||||||| | | |||||||||||||||||||| | | |||||| |||||    
T  3786636 atgtgtgccgtataacggctctgcaaacacccacctctatataaaggggactcctcgcagtccccaaggt 3786567  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 3824329 - 3824260
Alignment:
Q  81 atgtgtgccttacaatggctctgcaaacgcactcctctatataaaggggactcttagtagtcccaaaggt 150  Q
    ||||||||| || || |||||||||||| | | |||||||||||||||||||| | | |||||| |||||    
T  3824329 atgtgtgccgtataacggctctgcaaacacccacctctatataaaggggactcctcgcagtccccaaggt 3824260  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 31302380 - 31302440
Alignment:
Q  83 gtgtgccttacaatggctctgcaaacgcactcctctatataaaggggactcttagtagtcc 143  Q
    ||||||||||||| | |||||||  | | | |||||||||||||||||||||| |||||||    
T  31302380 gtgtgccttacaacgactctgcattcacccacctctatataaaggggactcttggtagtcc 31302440  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 10886854 - 10886903
Alignment:
Q  84 tgtgccttacaatggctctgcaaacgcactcctctatataaaggggactc 133  Q
    |||||||| ||| |||||||||||| | | ||||||||||||||||||||    
T  10886854 tgtgcctttcaacggctctgcaaacacccacctctatataaaggggactc 10886903  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 12094193 - 12094124
Alignment:
Q  81 atgtgtgccttacaatggctctgcaaacgcactcctctatataaaggggactcttagtagtcccaaaggt 150  Q
    ||||||||||||||| ||||| ||||||   | |||||||||||||||||||| | | |||||| |||||    
T  12094193 atgtgtgccttacaacggctccgcaaacatccacctctatataaaggggactcctcgcagtccctaaggt 12094124  T

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