View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_high_19 (Length: 437)
Name: NF1720_high_19
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 25868044 - 25867617
Alignment:
| Q |
1 |
ctaaggaagttaaaaattaaaataaac--ttcaatcgattttttcatagaagggagagtgnnnnnnnnnnnngttttcaagcaatgtcattgacaaggac |
98 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25868044 |
ctaaggaagttaaaaattaaaataaacacttcaatcgattttttcatagaagggagagtgaaaaaataaaaagttttcaagcaatgtcattgacaaggac |
25867945 |
T |
|
| Q |
99 |
actatttgtctgtttctttgtcttgtctgctggtataaagtcactagtttctacaaaaagattctaaccgatgatgatatttaggtcaaccaataaaaac |
198 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25867944 |
actgtttgtctgtttctttgtcttgtctgctggtataaagtcactagttactacaaaaagattctaaccgatgatgatatttgggtcaaccaataaaaaa |
25867845 |
T |
|
| Q |
199 |
-taatgatattttgatataaacaatgtaatttaattttcatttctcaaactttgatcaacaccattattcttcaaagatatccaatttcaatggcaaaga |
297 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25867844 |
ataatgatattttgatataaacaatgtaatgtaattttcatttctcaaactttgatcaacaccattattcttcaaagatatccaatttcaatggcaaaga |
25867745 |
T |
|
| Q |
298 |
gtgatgtgaagcttattggcaaatggtcaagtccttatgtgacaagggtgaagattgcccttaacatcaaatcccttgaatatgaaaactttgaagagaa |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25867744 |
gtgatgtgaagcttattggcaaatggtcaagtccttatgtgacaagggtgaagattgcccttaacatcaaatcccttgaatatgaaaactttgaagagaa |
25867645 |
T |
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| Q |
398 |
tgaaacctttaaccccaaaagtgatatt |
425 |
Q |
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| T |
25867644 |
tgaaacctttaaccccaaaagtgatatt |
25867617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 274 - 425
Target Start/End: Complemental strand, 44349163 - 44349012
Alignment:
| Q |
274 |
gatatccaatttcaatggcaaagagtgatgtgaagcttattggcaaatggtcaagtccttatgtgacaagggtgaagattgcccttaacatcaaatccct |
373 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44349163 |
gatatccaatttcaatggcaatgagtgatgtgaagcttattggcaaatggtcaagtccttatgtgacaagggtgaagattgcccttaacatcaaatccct |
44349064 |
T |
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| Q |
374 |
tgaatatgaaaactttgaagagaatgaaacctttaaccccaaaagtgatatt |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44349063 |
tgaatatgaaaactttgaagagaatgaaacctttaaccccaaaagtgatatt |
44349012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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