View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_high_22 (Length: 408)
Name: NF1720_high_22
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 393
Target Start/End: Complemental strand, 8921368 - 8920976
Alignment:
| Q |
11 |
caaaggtgtatggggcatgtagagtt-gacggggattagattcattcaactttaggtctttactcacatgcagtgttgctttctatagtgcctgcgccag |
109 |
Q |
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| T |
8921368 |
caaaggtgtatggggcatgcagagtttgacggggattagattcattcaactttaggtctttactcacatgcagtgttgctttctatagtgcctgcgccag |
8921269 |
T |
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| Q |
110 |
attgtgtctcttgaagtggagagagataattagtggaggtaattaaatagttaaccgagagattttagagtacttgtgatcactatctcattcgtttaag |
209 |
Q |
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| T |
8921268 |
attgtgtctcatgaagtggagagagataattagtggaggtaattaaatagttaaccgagagattttagagtacttgtgatcactatctcattcgtttaag |
8921169 |
T |
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| Q |
210 |
aattgaattatacttgtcattagggatacattacctttaattcagcaaggtgtaatgcatgtctcacctattttacctcaatcgccttgataaataaggt |
309 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
8921168 |
aattgaattatacttgtcattagagatacattacctttaattcatcaaggtgtaatgcatatctcacctattttacctcaatcgccttg----ataaggt |
8921073 |
T |
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| Q |
310 |
cacagcataaataacctgtt-------------attaattcatatatagcaacgcaaaacttaattaattttctcactctttttcttttccaatgtc |
393 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8921072 |
cacagcataaataacctgttgctctaaattatgattaattcatatatagctacgcatgccttaattaattttctcactctttttcttttccaatgtc |
8920976 |
T |
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